Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte17g00423 | ATGGCCAGCGACCCCAACAACCCCACCTTCACTCCTTGGCGTCAAAGTATTCGAAATTCCAACAGATTCTATGATTCTGTTGCTAGCTTTCCTAATGACAGTGATCCGAATGAGTTGCCTGTGCTCTACCGATCTCCCTCCTTACAAGCAATAGCTGAAATAACAGAAGGCGTAGTTGGTACTATGCAGGGACTCTTGGAGTACAGAAGGGCTGCAGGACTCTTCAACCTATCTGGTATTCCAGTACAATCAGAAAGTGGAAGGAGAGCTTTGGTTGTCGGCAATGACAGGAGAAGAGGCTTTAACCTCAGAACAAGACAGCTTTTCCAGGGGTCATCAACTCCCAGGTTTATTGGCCAAACAACAAATTCTCAGTTTCCAACAACTGAAGAGAACTCCAGGCTCACTCTGGATGAGCAAGAAAAGCCCTTGAGAAAACTCAAAAAATCAATCTATAACCCTGGACCAAAGAGGTTTGCAAGAAGGCTGAGCTTATATTATAGAAACAATGCAAAGAGTGACATCAAAGAAATGGAAAATGAGGATGAGGATGGTAAAAGGTGTACTGTTTGTTTGGAAGATTTGGAACCTGGAGAACAGGTAGCGATCACACCATGTAATCACATGTTTCATGAAGGTTGCATTGTTCCATGGTTGAAGAGCCATGGAAAGTGCCCTGTATGTAGGTTTGAACTCTGA | 699 | 0.4392 | MASDPNNPTFTPWRQSIRNSNRFYDSVASFPNDSDPNELPVLYRSPSLQAIAEITEGVVGTMQGLLEYRRAAGLFNLSGIPVQSESGRRALVVGNDRRRGFNLRTRQLFQGSSTPRFIGQTTNSQFPTTEENSRLTLDEQEKPLRKLKKSIYNPGPKRFARRLSLYYRNNAKSDIKEMENEDEDGKRCTVCLEDLEPGEQVAITPCNHMFHEGCIVPWLKSHGKCPVCRFEL* | 233 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte17g00423 | 232 | MobiDBLite | consensus disorder prediction | 114 | 133 | - | - | |
| Pte17g00423 | 232 | Pfam | Ring finger domain | 187 | 229 | IPR001841 | - | |
| Pte17g00423 | 232 | ProSiteProfiles | Zinc finger RING-type profile. | 188 | 229 | IPR001841 | - | |
| Pte17g00423 | 232 | SMART | ring_2 | 188 | 228 | IPR001841 | - | |
| Pte17g00423 | 232 | MobiDBLite | consensus disorder prediction | 114 | 135 | - | - | |
| Pte17g00423 | 232 | SUPERFAMILY | RING/U-box | 179 | 231 | - | - | |
| Pte17g00423 | 232 | PANTHER | SI:CH211-59O9.10 | 134 | 231 | - | - | |
| Pte17g00423 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 161 | 232 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte17g00423 | Pte-Chr17 | 5506934 | 5508626 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte17g00423 | 138 | 230 | C3H Transcription Factor Family | AT3G58720 | 54.545 | 3.03e-31 | 114 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte17g00423 | - | - | qsa:O6P43_000839 | 210.305 |