Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00402 ATGAATTGGAAAAACTTGGGATTAAAGAGGCTTTACTACCTTCTCACTGCCAAAGGTTTGGACAGTAGCAGCAGCCAAGGGAATACATCTCGCGATTGTCATTGCGTACCTGAGAATGCTGTGATGTATGGTATGATGCAATATAATGGTATGCCACACAATCTTGACTTATGTTACTCCGGCATGCATCTTCCAGGTACCAGAGTGCTGCCCATGCCTCCGAATCATGGGGCATGTGATCATTTTCCACCTTCAAACTTCTATATAGGTGGTTTTCTTGTTGATTCAGATAATTCTGGGAGGGGCAGGCATTTAGTGGAGGATGGTCGAGGTCCATACAAGAGAAAAGTTGAAGGCAATGCAGGGACTTTTCAGTATTACAATGCCTCTGCCAGTTCTAGTTCCTCTCTTGCACCTCAGTATATAAGACATCCAGATGGGATTGCCATGGTCGACACAGCATCTTTTTCCCTGCCACAGTACAGAGGAAGTAACACTGGTTCACCTATAGAAGTGGGACATCATGCCAATGTTTGGGCCAGGCCAGGGGAGCCTCTCATCTTGCCAGACAATAATCGCTTGATTCAAGGAAATTACTGGGGGCAATGCCTTCAGCCAGCATCCTGTCCCTGGCAACAGTTAAGCTCTCATAATGATATTGATGGACGTAATGCAGCTTGGAATCATTTCCCAGTGCCATATATACAAGAAACCAATCCTAACAGAAGTTCTTTGGAAAATGGGAATGTGGGTTTACCGAGATATCATGAGAAAACAATCAGTAGTGGTGGCCCCAGGTATCTGCCTCCTCCACCTCCAATCAACCCCAACTTCCATCATGGGTATCATATGCACGGAGGAAGACTTCAAAATGTGAACTTTCATCCTGGTGTAATCTCATCTTTATATGGAAATCCAACGAATGTCAGTACTGTTATCCCGGCACAGAATGGTTTTGAGATGGGTGCTCAACAGCTGAGGCCTGTATCTTCAGGTGGAATTAGGTTATACCATCCTCAAACAAATGGAGTCATGCCTGTAACAAATATTAGACATCATGGTGTTGCACGCTTGAGGCTCCTTCCATCTGACGAGGTAGCTATACTAGAGCTGCAAGACAATGATGAAAACGGTGAACTAATTGATCATCACAGTGATATGCGCCTCGACATAGATCACATGTCTTATGAGGAGCTTCTTGCATTAGGAGAGGTGATTGGTAATGTAAATACTGGTATGTCCGAGAAAACTATCTTGAGGAGACTGAAGACAAAAGCCTACTTAGCACCTGCTACTGCTACTATTAATCTGGAGGAGGCAGCCACTGATGATCAAGAACACGAATCTTGTATCATATGCCAGGAGGAGTATAGGAATGGAGAGAAGATTGGTCTTCTTGGATGTGGGCACTCGTACCACGTGAGCTGCTTGAAGAAATGGTTGCTTGTGAAAAATGTCTGCCCGATATGCAAATCAGAAGCATTGCCTACTGGGAAGAAGGATCGATATCATAAATAA 1518 0.4433 MNWKNLGLKRLYYLLTAKGLDSSSSQGNTSRDCHCVPENAVMYGMMQYNGMPHNLDLCYSGMHLPGTRVLPMPPNHGACDHFPPSNFYIGGFLVDSDNSGRGRHLVEDGRGPYKRKVEGNAGTFQYYNASASSSSSLAPQYIRHPDGIAMVDTASFSLPQYRGSNTGSPIEVGHHANVWARPGEPLILPDNNRLIQGNYWGQCLQPASCPWQQLSSHNDIDGRNAAWNHFPVPYIQETNPNRSSLENGNVGLPRYHEKTISSGGPRYLPPPPPINPNFHHGYHMHGGRLQNVNFHPGVISSLYGNPTNVSTVIPAQNGFEMGAQQLRPVSSGGIRLYHPQTNGVMPVTNIRHHGVARLRLLPSDEVAILELQDNDENGELIDHHSDMRLDIDHMSYEELLALGEVIGNVNTGMSEKTILRRLKTKAYLAPATATINLEEAATDDQEHESCIICQEEYRNGEKIGLLGCGHSYHVSCLKKWLLVKNVCPICKSEALPTGKKDRYHK* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00402 505 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 109 495 IPR045191 GO:0061630
Pte17g00402 505 Pfam Ring finger domain 449 491 IPR001841 -
Pte17g00402 505 SMART ring_2 450 490 IPR001841 -
Pte17g00402 505 MobiDBLite consensus disorder prediction 238 268 - -
Pte17g00402 505 ProSiteProfiles Zinc finger RING-type profile. 450 491 IPR001841 -
Pte17g00402 505 SUPERFAMILY RING/U-box 443 495 - -
Pte17g00402 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 495 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00402 Pte-Chr17 5178589 5181743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00402 379 497 C3H Transcription Factor Family AT2G15530 49.580 6.23e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00402 K19041 - qsa:O6P43_001011 462.611