LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte17g00397	ATGAAATTATCAGCTGAATCGAGTTCATGTTCGAGTCTAAAGAAAAACATGCGATCGGGTTTGAGACTTCGGAAGAAGCACAAAAGGCTTGATGCGATATATGAGAGAGAGTATAATAGAAACCATGGGGAGTTGAATGAGGACGATGTTGGTGGAATTATGAGTAAGAATGATGAAATGGACGTTCGCAGGAGCTCGCGAGTTAGAAGAGCGCCTGTATTGCTTGATGCATCTCCATCTCTCCCAAAGAAGCGGAGGAAGCTTGTGAAGAATGTGAAACTGAGTTGTGGAAAGAATGTGGCAAGTCCAGTGAATGTGAATCAGAAGCCTGCTAATGTGGAAAGTGCTGGAACTTGGTCACCAAGGCTGAGGGCAAGGGGTAGGCGTGTCGGTTTTACGGTGAAGGAGGAGAAAGATTTTCCAAGCTGGAAAAGGAGGCAGGATGCAGGTGAAAATTTGGATGATCAGAAAATGGAAGCTGCAGTGGATAGGAGAAAGGAAGAATTAGATGAGGTAATGACTACAGTTGTAAAGTCAAAGAGACCAGGGAGGGTTAAAGCCACAAAGCATTTAGGGGAAGGGCAAAATGCTAATAGTTCAAATATGAATTTCGAACAGAGTGTAATAGAAGTAAAGCTTTCCAGGAATGAGGACCAAGAGACTGGTTCTGTTTCGGAAGTTGAATTGGTCGATAGAGATTCAATAGAAATAGTGAACGATGAGGCCACTCCAACTATGGATAGAGAAGGTAGAGAAATATCAACCAGTATACAATTAGAAGAAGTTGTTGCAAATGAAAACATTGAGAATTTAGAAGGCAATGAAAAAAAAGTAGAAGGATCTGGTTGTGCGAATGAAGATGAAAAAAGAAATGGTGTCACAGGTATTGTTGGGGTTTCTGGTAATCAATTAGACAATGATGTGCATCTTGATGATGGAGAGGACGTCAATGAAGGAAAGACCTTGCAAGAGAAAGACATTACCAAAATGGATAAGCCCAAATATCTTTTAGATAGCATGCCTGGTGGAGCGAGGATTAAAGAGGGTAGACATTGTGGTTTGTGTGGGGGAGGAACTGATGGTAAACCACCAAAGAAGTTTGTTGATGAAAATGGCGAAAGTGAGAATGACGCATATAGTGGTTCTTCTGCTTCAGATGAACATAATTATGATATTTGGGATGGCTTTGGAGATGAACCCGGCTGGCTTGGACGTCTTTTAGGACCTATTAATGATCGTTATGGTATTGCTGGAATATGGGTGCATCAACACTGTGCTGTGTGGAGTCCAGAGGTTTATTTTGCTGGTTTAGGATGCTTAAAGAATGTAAGGGCTGCTCTTTGCAGGGGCAGAGCACTGAAGTGCACAAGATGTGGCAGGCGAGGAGCCACCATTGGATGCCGTGTTGATCGTTGTCCAAAAACATATCACTTGCCATGTGCACGGGCTAATGGATGCATCTTTGATCATCATAAATTTCTTATAGCCTGCACAGATCACAGGCATCTCTTCCAACCTCTTGGAAATAAATACTTAGCTCAGATAAAGAGACTGAAGGCTAGGAAAATGAAATTGGAACTCAGGAAGCTGTCAAATGATGCATCAAGGAAGGATGTTGAAGTAGAAGAAAAATGGTTGGAGAACTACGGCGAGGATGAAGAATTTTTGAAACGTGAAAGCAAGAGGCTACACCGTGATCTTTTGAGAATTGCCCCTGAATATATTGGTGGACCAGAATCTGAAAACAAAGACAAGTTTCAGGGTTGGGAATCTGTTGCTGGCCTTAAAGATGTCATTCAGTGCATGAAAGAAGTTGTCATATTGCCTCTGCTGTATCCTGAGTTTTTTGACAGCATGGGACTCACTCCTCCCAGAGGTGTTCTTTTGCATGGGTATCCAGGAACTGGGAAAACTCTAGTGGTGCGAGCACTGATTGGTGCATGTGCCCGTGGTGACAGAAGGATATCTTATTTTGCTCGGAAAGGTGCAGATTGCTTGGGAAAGTATGTTGGTGATGCTGAGCGTCAATTGAGACTATTATTTCAGGTCGCTGAGAAATGTCAGCCTTCAATAATATTCTTTGACGAGATAGATGGTTTAGCACCCTCAAGAACAAGAAATCAAGATCAAACACATAACTCAGTTGTTTCAACATTGCTTGCTTTATTAGATGGTTTGAAATCTCGAGGTTCTGTTGTGGTTATTGGAGCAACAAATCGACCAGATGCTGTTGATCCTGCACTTCGGCGGCCTGGACGATTTGATCGGGAGATATATTTTCCACTGCCCTCGGTCGACGATAGAGCTGCCATTCTCTCACTTCACACGCAGAAATGGCCAAAACCAATTACTTGGCCTTTGCTTGAGTGGATTGCTAGAAGAACTGCTGGATTTGCTGGTGCTGATCTTCAGGCTCTCTGTACCCAAGCTGCAATTAATGCTTTGAAGAGGATTTTCCCTTTGCATGAAGTACTGTCTTCTGCAGTAGATAATGTTCATAAGCACCTTCCTCTTCCAACCTTTTCTGTGGAGGAGAGGGATTGGTTGGAGGCTATGTTGAGTTCTCCTCCTCCATGTTCTCGCAGAGAAGCTGGAAATGCTGTTAATGATGTACAATGCTCTTCTCTGCAGATCCACCTCTTGCCTTGCCTTCTTCGACCATTGTGCAACCTTCTGATATCTCTCTATCTTGATGACCGGCTTTCATTGCCTCCTTCAATAATGAAAGCTGCATTGACAATTAAAAGTAGGATTGTTTCTCTGTTGGATAAAAAGAAAATGCCCCTTGGTCAATGGTGGTTACACGTTGATGATTTCCTTCAAAGAGAAGACATTGCGACTGAAATAAGTGCTAAACTCATACATTTAAGCGTCATTGTAGATGATAGCACTGGTGGTTCTCGTGCTTTTCTAGATGATGTTGATTATGTCTATATCAACCTGGAACCTTTTGAAAAACGCTACGTTATCCACCAAACTTGCTTATTACAAACCACATCTTCTGCTTTGACTGACAAAGCAGGGTTTCAGGTACTAATTGCTGGACATTCAAAATCTGGCCAGAGACATCTTGCTTCTTGCCTTCTTAACTGCTTTGTTGGGAATGTTGAAATTCAAAAAGTAGATGCTGCTACAATATCACAAGCAGGCCGTGGAGATATGGTGCAAGGGATTGCACAATTGCTAATAAGATGCAATAGTGTGAGATCGTGCCTGATATTCATGCCAAGAATTGACTTATGGGCGATTGAGACGAATAGTGAAATTGCCAATGAGAAAGAGTCTTATGTCACCCACATCCAAAATATTGAGCAGGAAAATGGATCCTATGCTGGGAAAAAGAACATTACAGAGCCTAGAAAGGACCAAGAAGACCACAGGACTGCTTCATACAGCTGGATCTCTTTCATTGAGCAGTTTGAGTCTATTGGTGTCAAAACATCCTTGATGGTTTTGGCTACTTCAGAAGTTCCATTTCCTGAACTTCCACGTAGAGTGAGGGAGTTCTTTAAGCATGATGAATCAACTGGCAACAGCTTGACTACTTCAAATTACAAAGTCCCTTGTTTCACAGTGCAGATAGATGAGAATTTTGATCGTGATATGGTGATCAACTTTTCAGCATCAGAGCTGTCAAGGGACATAGTTAAGCAAATGGTTCAGGTGATTCATCAGAGAACTCACATTCAAAATAGTCTTTGCAAGGAGTATATCACTGATTCAATGGAAGCTGACATAGGTCAAGTCCGCAAGGAAATAAATGATTGCTCAGCAAATGGATACAAGGATAGAATGCAGTGTCCTGGTGAAACTCTTACCAAAATTTCCCAACAACCTAGCAGCAAAAACTTGAAGGGGAAGACAAACCTTTTATTAGCAATAGCTTCCTTTGGCTACCAAATTCTTCTGTATCCTCATTTTGCCGAACTCTGCTGGATCACATCAAAGTTGAATGAAGGTCCTTGTGCTGATGCAAGTGGACCTTGGAAAGGTTGGCCTTTCAATTCTTGTATTGTGCGTCCAAATAAAGTAGATAGGGCACCTGCTTCTTGTGGAACTGGAAATATGAAAACCAAAGAGAAATCTGGTTTTGTTAGAGGCCTTGTGGCAGTTGGTTTATCAGCATATAGAGGTGTCTATACATCTGTCAAGGAAGTCTCCGTTGAGATCAGGAAGGTTCTTGAGCTCTTAGTGGAGGAAATTAACACAAGAATCCAAGGTGGAAACGAAAGGCATCAATATATCCGTGTTGTATCGCAAGTTGCTTACCTGGAAGATTTGGTGAATAGCTGGGCCTATGGATTGCTAAGTCTAGAACCTGATTCAACAGGAATAGAAGCAAAGCATTTGCCAAATTCTGAAGCATCTCTAAATTATAACAAGTCGTGTGAAGATAATCAAGTTGAGCTTGAAGGTTGCCAGTTAACTATTCCTGTGGAGAGGCCTCTTGATTCAATGATGCTGAAGGATACTTCTCAAGAAATCAACACACAAGAACCTGAATGTTGTGACTTGCATAATAAAAGTGATCATTTGATAGATCGAGTAATAAACTCTCAGAATGAACGAAGTGACAGTTCGACGGCAAAACAGTTAACTGGCGAAGTTCCGGGTGACAAAAAGATTACCAGTTTTGTTGCTACAAAACCATTCAATGATGAATTTCAGAATGAAGTGAACGGGGAGATTTCTGTATCATTCAAGTCTCAAGATTCTGAAAATCAAGTTGTGGATAAAGATCTTAGGCCTTCAAACAAATCTAAGGGTTTTGCAAATTATAAAGAGACCTTCCTTGACAAAGACGACCTCCATGTTTCATGTGAAATTGAGTCTGCTCAATTTGGTAATTCCACGGGGATGTCCAACCAGGTTTGCAGCGTGCCCTTGTTAGAGAAGGGTATTGAAGGAAGTAATGTTAACTCTGATGCCAATGAAAATGCTGTTAACATTTTATCAGACAGAACGGATGAGCCTGCAGAATCAGGAGCGCTATGTATGTATCAATGTTGCCCTGAATGTCTTCGGAGCCTATATGGATTGATTCAGAAAATTCTCACTACAAAAATGGGGATGCATGGGAGCCATTGGACTGCAGAGGAAATCCACCATGTTGTGACATCGTCATCAATCAACCTTTCTTCAGCAGTTAGAAAAGCTTGTCTGGCAGGAGATTTGAGCGAAATTTCTGCTGTAGATTTGAAATGCAGTAAGCAAGGAACTAAGTTTCCTGTTTCAAGAACGAATGAGCTTGAATTCTCTAGAAGAGTGACAGCCCCTGCTGAATGTACCCTCCATTCCATAACGTTGGACAGGACCGCAAAAAATATACAACTCCAGCTTGATTCAAAATTTATATTCAGAGATGGCGTACTGGTTCACTTAGATGTAGACAAGGACGCAAGTTTCCACTGTAAATTCGAAACCCTTTGCCTCTGTTCTCTTATAGAGTTGATAGAATTGACGAAGCACCCTTTTGATTGA	5481	0.4163	MKLSAESSSCSSLKKNMRSGLRLRKKHKRLDAIYEREYNRNHGELNEDDVGGIMSKNDEMDVRRSSRVRRAPVLLDASPSLPKKRRKLVKNVKLSCGKNVASPVNVNQKPANVESAGTWSPRLRARGRRVGFTVKEEKDFPSWKRRQDAGENLDDQKMEAAVDRRKEELDEVMTTVVKSKRPGRVKATKHLGEGQNANSSNMNFEQSVIEVKLSRNEDQETGSVSEVELVDRDSIEIVNDEATPTMDREGREISTSIQLEEVVANENIENLEGNEKKVEGSGCANEDEKRNGVTGIVGVSGNQLDNDVHLDDGEDVNEGKTLQEKDITKMDKPKYLLDSMPGGARIKEGRHCGLCGGGTDGKPPKKFVDENGESENDAYSGSSASDEHNYDIWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRRGATIGCRVDRCPKTYHLPCARANGCIFDHHKFLIACTDHRHLFQPLGNKYLAQIKRLKARKMKLELRKLSNDASRKDVEVEEKWLENYGEDEEFLKRESKRLHRDLLRIAPEYIGGPESENKDKFQGWESVAGLKDVIQCMKEVVILPLLYPEFFDSMGLTPPRGVLLHGYPGTGKTLVVRALIGACARGDRRISYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPSRTRNQDQTHNSVVSTLLALLDGLKSRGSVVVIGATNRPDAVDPALRRPGRFDREIYFPLPSVDDRAAILSLHTQKWPKPITWPLLEWIARRTAGFAGADLQALCTQAAINALKRIFPLHEVLSSAVDNVHKHLPLPTFSVEERDWLEAMLSSPPPCSRREAGNAVNDVQCSSLQIHLLPCLLRPLCNLLISLYLDDRLSLPPSIMKAALTIKSRIVSLLDKKKMPLGQWWLHVDDFLQREDIATEISAKLIHLSVIVDDSTGGSRAFLDDVDYVYINLEPFEKRYVIHQTCLLQTTSSALTDKAGFQVLIAGHSKSGQRHLASCLLNCFVGNVEIQKVDAATISQAGRGDMVQGIAQLLIRCNSVRSCLIFMPRIDLWAIETNSEIANEKESYVTHIQNIEQENGSYAGKKNITEPRKDQEDHRTASYSWISFIEQFESIGVKTSLMVLATSEVPFPELPRRVREFFKHDESTGNSLTTSNYKVPCFTVQIDENFDRDMVINFSASELSRDIVKQMVQVIHQRTHIQNSLCKEYITDSMEADIGQVRKEINDCSANGYKDRMQCPGETLTKISQQPSSKNLKGKTNLLLAIASFGYQILLYPHFAELCWITSKLNEGPCADASGPWKGWPFNSCIVRPNKVDRAPASCGTGNMKTKEKSGFVRGLVAVGLSAYRGVYTSVKEVSVEIRKVLELLVEEINTRIQGGNERHQYIRVVSQVAYLEDLVNSWAYGLLSLEPDSTGIEAKHLPNSEASLNYNKSCEDNQVELEGCQLTIPVERPLDSMMLKDTSQEINTQEPECCDLHNKSDHLIDRVINSQNERSDSSTAKQLTGEVPGDKKITSFVATKPFNDEFQNEVNGEISVSFKSQDSENQVVDKDLRPSNKSKGFANYKETFLDKDDLHVSCEIESAQFGNSTGMSNQVCSVPLLEKGIEGSNVNSDANENAVNILSDRTDEPAESGALCMYQCCPECLRSLYGLIQKILTTKMGMHGSHWTAEEIHHVVTSSSINLSSAVRKACLAGDLSEISAVDLKCSKQGTKFPVSRTNELEFSRRVTAPAECTLHSITLDRTAKNIQLQLDSKFIFRDGVLVHLDVDKDASFHCKFETLCLCSLIELIELTKHPFD*	1827

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte17g00397	1826	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	589	821	IPR027417	-
	Pte17g00397	1826	Pfam	PHD-like zinc-binding domain	422	501	-	-
	Pte17g00397	1826	SMART	AAA_5	623	764	IPR003593	GO:0016887
	Pte17g00397	1826	MobiDBLite	consensus disorder prediction	1	22	-	-
	Pte17g00397	1826	Gene3D	-	763	853	-	-
	Pte17g00397	1826	FunFam	ATPase family, AAA domain-containing 2	586	769	-	-
	Pte17g00397	1826	PANTHER	AAA DOMAIN-CONTAINING	19	1721	IPR045199	-
	Pte17g00397	1826	Pfam	AAA+ lid domain	788	820	IPR041569	-
	Pte17g00397	1826	Pfam	ATPase family associated with various cellular activities (AAA)	627	762	IPR003959	GO:0005524\|GO:0016887
	Pte17g00397	1826	Gene3D	-	588	861	IPR027417	-
	Pte17g00397	1826	FunFam	p-loop containing nucleoside triphosphate hydrolase superfamily protein	763	853	-	-
	Pte17g00397	1826	FunFam	P-loop containing nucleoside triphosphate hydrolases superfamily protein	347	503	-	-
	Pte17g00397	1826	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	400	503	IPR013083	-
	Pte17g00397	1826	ProSiteProfiles	Extended PHD (ePHD) domain profile.	349	501	IPR034732	-
	Pte17g00397	1826	MobiDBLite	consensus disorder prediction	1	16	-	-
	Pte17g00397	1826	ProSitePatterns	AAA-protein family signature.	732	750	IPR003960	GO:0005524\|GO:0016887
	Pte17g00397	1826	Coils	Coil	508	528	-	-
	Pte17g00397	1826	MobiDBLite	consensus disorder prediction	363	385	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte17g00397	Pte-Chr17	5137796	5145620	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte17g00397	589	824	Calmodulin-binding Proteins	AT3G56690	42.017	5.51e-45	176

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte17g00397	-		-	qsa:O6P43_029140	2004.56