Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00394 ATGGATTTCTTCTCCAACAAAATCCAGAAACACCAGCCAAAACACAACAAAAAGAGGTTAACACAAGACCAAGTGAGCATCCTAGAGAGAAACTTTGTCTCAGACAAGAGGCTTGAGCCAGAGAGGAAGCTACAGCTTGCTAATCAACTTGGTGTCCCTCCAAGACAAATAGCTATTTGGTATCAGAACAAACGAGCCAGGTGGAAGACCCAGAGTCTTGAGCTGGACTATGGTTCTCTTCAATTGAAGCTGGAGAATGCCATAGCTGAGAAGAGGAAGCTGGAGAAAGACGTTGAAAGGCTCAAGTTGGAGCTCAAGAAAGCTCAGGACATGTTGAAGGACAAGGACCCTAATGTTTCTTCATGTTGTTCAACATCTGGTTTTGAAGAAAGCAAGCAAGGAGTTTCCTGCTTGCAAGGAGATATGAATGCGTTGTGGGGTAATTGTGAGGTTTTGCAGCTTGAGGAGATCTATGCTTGTTTCATGGAAGCAAATAGATCAAGCTTTGATTAA 513 0.4327 MDFFSNKIQKHQPKHNKKRLTQDQVSILERNFVSDKRLEPERKLQLANQLGVPPRQIAIWYQNKRARWKTQSLELDYGSLQLKLENAIAEKRKLEKDVERLKLELKKAQDMLKDKDPNVSSCCSTSGFEESKQGVSCLQGDMNALWGNCEVLQLEEIYACFMEANRSSFD* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00394 170 MobiDBLite consensus disorder prediction 1 20 - -
Pte17g00394 170 SUPERFAMILY Homeodomain-like 13 79 IPR009057 -
Pte17g00394 170 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 12 132 IPR045224 GO:0003700
Pte17g00394 170 CDD homeodomain 14 72 IPR001356 GO:0003677
Pte17g00394 170 ProSiteProfiles 'Homeobox' domain profile. 11 71 IPR001356 GO:0003677
Pte17g00394 170 Coils Coil 77 111 - -
Pte17g00394 170 SMART HOX_1 13 75 IPR001356 GO:0003677
Pte17g00394 170 PRINTS Lambda-repressor HTH signature 42 51 IPR000047 GO:0003677
Pte17g00394 170 PRINTS Lambda-repressor HTH signature 51 67 IPR000047 GO:0003677
Pte17g00394 170 Gene3D - 13 76 - -
Pte17g00394 170 ProSitePatterns 'Homeobox' domain signature. 46 69 IPR017970 GO:0000981|GO:0006355
Pte17g00394 170 Pfam Homeodomain 16 69 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00394 Pte-Chr17 5119281 5120158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00394 12 168 Homeobox Transcription Factor Family AT5G53980 43.558 4.45e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pte17g00394 Homeodomain 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00394 - - qsa:O6P43_000999 208.764