Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00379 ATGTCTGTATCTTCTCAGCAAGAGATTTCATATTCCTCACGCATTCATGACTACCATGACCCCCATGTCAATGGAAGCGTAGAAGATGAAGGTGAAGATGATAATGAAGAAGAATTAACAGAAGATGAAGAAGATGAAAACGGCCGGGGTACTCCTGAAAAGCTCGACTGCTGGCAAAGCACAGGTGCCGGAAATTTAGTGTGTGGGAGGGGAGGACGGGAGCGTTGGTCATTTGGACGAGTACTGGACCCAAGAGCCAAATGGGTCCAAGAATGGAACAGGGTCTTTCTCCTTGTATGTGCAGCTGGTTTGTTTGTGGACCCGCTGTTCTTCTATGCACTCTCCATAAGCGAAACGTGTATGTGTCTATTCGTCGACGGGTGGTTCGCTATCACAGTGACGGTGCTCCGGTGCATGACCGATGCATTGCACGTGTGGAACATGTGGTTGCAGCTGAAGATGGCCAAACGGACGTTTGCCGTGGGTGTTGGGAGTGGAGTGTTGTCCGATACTTCTCCCCGTTCAGTGGCTCTGCGATATTTGAAGGGTAAAAGAGGGTTTTTCTTTGATCTCTTCGTCATTCTTCCTCTACCTCAGATTGTCCTCTGGGTTGCAGTACCAGCTATGTTAGAAAGAGGTTCAGTGACAGAAGTGATGACAGTATTCTTAATCATCTTCCTTTTCCAATATCTTCCAAAGATCTACCATTCAGTCTGCCTCTTGCGTCGCATGCAGAACCTCTCAGGTTACATCTTTGGAACAGTTTGGTGGGGAATTGCCCTTAACATGATTGCATACTTTGTTGCTTCCCATGCTGCAGGGGCATGTTGGTACTTGCTAGGGATCCAAAGAGCTGCAAAGTGCCTGAGAGAACAATGCAGAGGGACTGGTGATTGTGGTTTGAGATTGCTATCTTGCAAAAAATCAATTTATTATGGAAGAGGTGGCATGGTGAGTGATAGGCCAATAGTAGCATGGTCTCAGAACAAACAGGTAAGGTCAACATGCATAGATAGTCCTGATAATTACGATTATGGAGCTTACAAATGGACTGTTCAACTAGTCACCAATGATAGTCGTTTGGAAAAGATATTGTTTCCCATCTTCTGGGGCCTCATGACTCTCAGCACTTTTGGGAATCTGGTGAGCACAACAGAATGGCTAGAAGTTGTGTTTAATATTATTGTCCTCACGAGTGGGCTACTTCTAGTCACCATGTTGATTGGAAACATTAAGGTGTTTCTGCATGCAACAACATCAAAGAAGCAAGCAATGCAACTGAAGATGAGAAACATAGAATGGTGGATGAGGAAAAGGCAATTGCCTCAAGGGTTCAGGCAGCGTGTGAGAAACTATGAGCGACAAAGATGGGCAGCCACTCGTGGGGTCGATGAGTGTGAAATGATAAGGAACCTACCTGAGGGCCTTAGGAGGGACATCAAGTATCACTTGTGCTTGGACTTAGTCAGACAGGTGCCGTTGTTTCAGCATATGGATGATTTGGTGTTAGAGAATATATGTGACAGAGTGAAGTCTCTAATTTTTACGAAGGGGGAGACAATAACCCGTGAAGGAGACCCTGTTCAGAGAATGTTATTTGTTGTTAGAGGACACCTTCAAAGCAGCCAAGTCCTACGTGATGGTTTGAAAAGTTGTTGCATGTTAGGCCCTGGAAACTTCAGTGGTGATGAACTACTCTCATGGTGTTTGAGAAGACCTTTCGTCGAACGGCTTCCGCCGTCTTCATCCACTTTAGTCACCCTTGAAACAACTGAAGCATTTGGGCTGGAAGCTGAGGACGTCAAGTATGTGACACAGCATTTTAGGTACACATTTGTGAATGAAAAGGTGAAGAGAAGTGCAAGGTACTATTCACCTGGATGGAGGACTTGGGCTGCTGTGGCTATACAGTTGGCTTGGAGGAGGTACAAGCACAGACTGACCTTGACATCGTTGTCATTTATAAGGCCAAGGAGGCCTGTGTCAAGATGTTCGTCAATGGGAGAGGACAGGCTTCGGCTCTATACTGCTCTATTAACTTCACCTAAGCCAAATCAGGATGATTTTGATTTTTAA 2076 0.4557 MSVSSQQEISYSSRIHDYHDPHVNGSVEDEGEDDNEEELTEDEEDENGRGTPEKLDCWQSTGAGNLVCGRGGRERWSFGRVLDPRAKWVQEWNRVFLLVCAAGLFVDPLFFYALSISETCMCLFVDGWFAITVTVLRCMTDALHVWNMWLQLKMAKRTFAVGVGSGVLSDTSPRSVALRYLKGKRGFFFDLFVILPLPQIVLWVAVPAMLERGSVTEVMTVFLIIFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLREQCRGTGDCGLRLLSCKKSIYYGRGGMVSDRPIVAWSQNKQVRSTCIDSPDNYDYGAYKWTVQLVTNDSRLEKILFPIFWGLMTLSTFGNLVSTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAATRGVDECEMIRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGLKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPVSRCSSMGEDRLRLYTALLTSPKPNQDDFDF* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00379 691 ProSiteProfiles cAMP/cGMP binding motif profile. 494 604 IPR000595 -
Pte17g00379 691 Pfam Ion transport protein 92 411 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pte17g00379 691 SUPERFAMILY cAMP-binding domain-like 420 608 IPR018490 -
Pte17g00379 691 SUPERFAMILY Voltage-gated potassium channels 84 415 - -
Pte17g00379 691 FunFam Cyclic nucleotide-gated ion channel 1 421 485 - -
Pte17g00379 691 FunFam cyclic nucleotide-gated ion channel 4 492 610 - -
Pte17g00379 691 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 74 656 - -
Pte17g00379 691 CDD CAP_ED 494 600 IPR000595 -
Pte17g00379 691 MobiDBLite consensus disorder prediction 1 56 - -
Pte17g00379 691 Pfam Cyclic nucleotide-binding domain 515 602 IPR000595 -
Pte17g00379 691 MobiDBLite consensus disorder prediction 13 28 - -
Pte17g00379 691 Gene3D Helix hairpin bin 419 485 - -
Pte17g00379 691 Gene3D Jelly Rolls 492 610 IPR014710 -
Pte17g00379 691 MobiDBLite consensus disorder prediction 29 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00379 Pte-Chr17 4924768 4929140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00379 69 690 Ion Channels AT5G54250 79.081 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00379 K05391 - zju:107430493 1165.6