Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00368 ATGCATTTAAGTTATCAGCTTTTTGACAATATTGTTGGGTTATATTATTCAGGAGGAGCTTGTGGCTATGACAATACCTTTCATGCTGGGTTTGGAGTGAACACTGCTGCAGTCAGCACAATGCTGTTCAGGGGTGGTCAAGTTTGTGGGGCTTGCTACCAAGTGATGTGCGACTACAGGGTCGACCCAAAATGGTGCCTCAGAAGTCGTACTGTCATCGTCACTGCCACAAATTTCTGCCCTCCAAACAACAATGGAGGATGGTGCAATCCCCCTCACCACCACTTCGACATGTCCATGCAGGCTTTCTTCCGCATTGCGAGGCAAGGAAATGAAGGCATTGTTCCTGTCCTCTACAGAAGGGTGGCTTGCAAAAGACGAGGTGGGGTGAGATTCACATTGAAGGGGCAATCAAACTTTAACATGGTGATGATATCAAATGTTGGAGGTAGTGGGGATATTAAGGCTGTATCGATAAAGGGATCAAGAATGAGAAGATGGGTTGGCATGCATAGGAACTGGGGTGCAAATTGGCAAAGCAGTGTTGATGTTCGAAACCAAAGACTGTCATTCAAGCTCTCTTTGGTTGATGGAACAACTCTGCAATTCATCGATGTCGTTCCTTCTTCTTGGTGGTTTGGCCAGACATTTTCTTCACGTACCCAATTCTATTAA 675 0.4563 MHLSYQLFDNIVGLYYSGGACGYDNTFHAGFGVNTAAVSTMLFRGGQVCGACYQVMCDYRVDPKWCLRSRTVIVTATNFCPPNNNGGWCNPPHHHFDMSMQAFFRIARQGNEGIVPVLYRRVACKRRGGVRFTLKGQSNFNMVMISNVGGSGDIKAVSIKGSRMRRWVGMHRNWGANWQSSVDVRNQRLSFKLSLVDGTTLQFIDVVPSSWWFGQTFSSRTQFY* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00368 224 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 18 129 IPR007112 -
Pte17g00368 224 PRINTS Expansin signature 86 103 IPR002963 GO:0009664
Pte17g00368 224 PRINTS Expansin signature 30 44 IPR002963 GO:0009664
Pte17g00368 224 PRINTS Expansin signature 128 140 IPR002963 GO:0009664
Pte17g00368 224 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Pte17g00368 224 PRINTS Expansin signature 205 221 IPR002963 GO:0009664
Pte17g00368 224 PRINTS Expansin signature 59 70 IPR002963 GO:0009664
Pte17g00368 224 PRINTS Expansin signature 72 82 IPR002963 GO:0009664
Pte17g00368 224 PRINTS Expansin signature 140 161 IPR002963 GO:0009664
Pte17g00368 224 SUPERFAMILY PHL pollen allergen 126 219 IPR036749 -
Pte17g00368 224 Pfam Expansin C-terminal domain 130 208 IPR007117 -
Pte17g00368 224 CDD DPBB_EXPA_N 18 124 - -
Pte17g00368 224 SMART dpbb_1 35 119 IPR007112 -
Pte17g00368 224 Pfam Lytic transglycolase 35 119 IPR009009 -
Pte17g00368 224 SUPERFAMILY Barwin-like endoglucanases 16 147 IPR036908 -
Pte17g00368 224 PRINTS Expansin/Lol pI family signature 17 35 IPR007118 GO:0005576
Pte17g00368 224 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Pte17g00368 224 PRINTS Expansin/Lol pI family signature 112 128 IPR007118 GO:0005576
Pte17g00368 224 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Pte17g00368 224 PRINTS Expansin/Lol pI family signature 167 181 IPR007118 GO:0005576
Pte17g00368 224 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 139 219 IPR007117 -
Pte17g00368 224 PANTHER EXPANSIN-A15 18 222 IPR002963 GO:0009664
Pte17g00368 224 Gene3D - 129 224 IPR036749 -
Pte17g00368 224 Gene3D - 8 125 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00368 Pte-Chr17 4817473 4818249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00368 16 220 Expansin Gene Family AT3G15370 70.732 2.01e-110 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00368 - - qsa:O6P43_000951 375.17