Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00366 ATGGCTGACATGTTTACAGGGTTGTATCCCATGGAAGATGCAATTCTTCACCCAACTTCATTTGAATACACTGTCGCCCTTGATATTCCAACTGCTACGATCTTCTGCGTATTCCTAGCTCTATTCTTCTTCATCCTCTATCATATTCTCAGTGGATTATTTGAATGGCTGATGCAAGAACTGCCTGGTCACAATGACCTCGAAGAAGGACGCCATCCTGGGGTTGTCTCAAGCTCTTCTCATTATGCTGAATCTTTTCCAGTCGTGGTCCAAAACAATCCGCAGGTGTTAACAATGTTGGAAACGTTCATGAGGGATATAGAAGAAAGGCAAGGGAATCCACTTGGAGGCATAGAGAAATGGTCACTACCATTAGTGAAATATGGAAGCAATGGTGCCACAAGTTGCGATACTTGTGCCATTTGCTTGGAGGACTTCCATCATGGGGAGCCTTGTCATGTTTTTCCAGGGTGCAATCATATTTTTCATTCTGCTTGCATCGATGACTGGTTGAAGAATAAGCTAAGCTGTCCGATTTGTCGATCGTCATTGTATAAGGAGCAATGA 567 0.4339 MADMFTGLYPMEDAILHPTSFEYTVALDIPTATIFCVFLALFFFILYHILSGLFEWLMQELPGHNDLEEGRHPGVVSSSSHYAESFPVVVQNNPQVLTMLETFMRDIEERQGNPLGGIEKWSLPLVKYGSNGATSCDTCAICLEDFHHGEPCHVFPGCNHIFHSACIDDWLKNKLSCPICRSSLYKEQ* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00366 188 CDD RING-H2_PA-TM-RING 138 181 - -
Pte17g00366 188 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 33 184 IPR044675 -
Pte17g00366 188 SMART ring_2 139 180 IPR001841 -
Pte17g00366 188 Pfam Ring finger domain 137 181 IPR001841 -
Pte17g00366 188 SUPERFAMILY RING/U-box 138 186 - -
Pte17g00366 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 186 IPR013083 -
Pte17g00366 188 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00366 Pte-Chr17 4796655 4797221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00366 117 188 C3H Transcription Factor Family AT3G10910 46.053 5.32e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00366 - - jre:109018137 163.696