Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00350 ATGGGAAAACCTCCTAGTGATGAAAATGGATTGAAGAAAGGTCCATGGACTCCCGAAGAGGACCAGAAACTAATTGATTACATTCAGAAATATGGCCAAGGGAAATGGCGGACAATCCCAAAGAATGCAGGATTGAGAAGGTGTGGAAAGAGTTGCCGGCTGCGTTGGACCAACTACTTGAGGCCTGACATCAAAAGAGGAAGCTTCTCTTTGGAAGAAGAACAAGCTATCATCCAGCTCCATAGTCTTCTTGGAAACAAGTGGTCTACTATTGCTGCTAGATTACCAGGAAGAACAGATAATGAAATCAAGAACTACTGGAATACACATATCAAGAAGAAACTACTGAAGATGGGAATAGATCCGGTGACTCACGCTCCACATCTTGATCTTCTTCAACTCTCCTCAATTCTCAGCTCATCCCTTTGCAGTTCACCGCAACTAAGTTATCCTACAGATTCCTTTGGTGTTAGCAATGCATTAAATCAAAATCTGCTAAGTTTGGTTGCAGCACTGTTGTCATCTCAGTACAGGAATCCTGATAGTACTGTAACTCAAAGTCTACAAAACCAAGTTTCCAATGTTCAGCTCTCGTCCCAACATGCTCAGTTGAATACAACCCAAACCTCTAATGGAGATGAGCTCCAAGTCCTAAAGGATCAAGCAAATCAACTTTGTGGAATGACATCTACCACTTCAACCAGCTGTAGACCTCAATTTGAGACACCAACACTGGAGCAATTCTCTCCAGCTATGGCTAACTTGAGTTTCCAAAACCACCTACCAAATTTGTGGCAATATAGCGAAAGCCAGTCGGAGCAGCAGTCTGCTTTGGCTAACGCTGATGATTCTACAGCAAACTTAGACTCCTTCATTGAGCTCCTAAGAAGTCAGATTTTACAACCCAATCTAGATACTGAGAGCTTCCCAAGCTGTAGCTTTGAAAATCTTCTGTCATCATCAACTTTATCTTCTTCCCCAACACCCTTGAATTCCACGCCTACAGTTTCTTATGCCAATGGCAGCGTTGAAGATGACCGGGACACCCACTGCAGTAATAGGTTGATGTCTAACAGACACAACACCTTGAAAGATAGCAGAATCATGTGA 1110 0.4288 MGKPPSDENGLKKGPWTPEEDQKLIDYIQKYGQGKWRTIPKNAGLRRCGKSCRLRWTNYLRPDIKRGSFSLEEEQAIIQLHSLLGNKWSTIAARLPGRTDNEIKNYWNTHIKKKLLKMGIDPVTHAPHLDLLQLSSILSSSLCSSPQLSYPTDSFGVSNALNQNLLSLVAALLSSQYRNPDSTVTQSLQNQVSNVQLSSQHAQLNTTQTSNGDELQVLKDQANQLCGMTSTTSTSCRPQFETPTLEQFSPAMANLSFQNHLPNLWQYSESQSEQQSALANADDSTANLDSFIELLRSQILQPNLDTESFPSCSFENLLSSSTLSSSPTPLNSTPTVSYANGSVEDDRDTHCSNRLMSNRHNTLKDSRIM* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00350 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Pte17g00350 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Pte17g00350 369 FunFam MYB-related transcription factor 12 65 - -
Pte17g00350 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 262 - -
Pte17g00350 369 MobiDBLite consensus disorder prediction 321 353 - -
Pte17g00350 369 Gene3D - 68 115 - -
Pte17g00350 369 CDD SANT 68 111 IPR001005 -
Pte17g00350 369 CDD SANT 15 60 IPR001005 -
Pte17g00350 369 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Pte17g00350 369 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pte17g00350 369 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pte17g00350 369 FunFam Transcription factor MYB39 68 129 - -
Pte17g00350 369 SMART sant 65 113 IPR001005 -
Pte17g00350 369 SMART sant 12 62 IPR001005 -
Pte17g00350 369 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Pte17g00350 369 Gene3D - 10 66 - -
Pte17g00350 369 MobiDBLite consensus disorder prediction 321 342 - -
Pte17g00350 369 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00350 Pte-Chr17 4566255 4567628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00350 4 145 MYB Transcription Factor Family AT4G21440 80.986 1.71e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte17g00350 Myb_DNA-binding 1.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00350 K09422 - qsu:112004686 322.783