Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00346 ATGGCCATGAGAGCGGCGGCTATGGCGGTGGCGGAGGCGGGGCCTTCCCGCCTAAGGAGACTCTTCTGTAGTTCAGTTCCATCATTTATTCCTCCTCCAATCCCTGGAAACGTTCCTGCCCGTGAGACTGCCGAACCAAATTGCAACCTTTTCGTCTCTGGGCTTAACAAAAGAACTACTACTGAGAAACTACAGGAGGCATTTTCTGCATTTGGAGAAGTTGTTCACGCTAGGGTGGTGACTGATCGTGTTTCAGGATTCTCTAAAGGGTTTGGTTTTGTAAGATATGCAACCATAGAAGAGGCCGCTAAAGGCATTGAGGGTATGGATGGCAAGTTTCTTGATGGCTGGGTTATATTTGCTGAGTATGCAAGGCCGAGACAACCATTTCCACCGCCTAATAATTTCAACACTCCTCCATATGGCAGGCAGTGA 435 0.4874 MAMRAAAMAVAEAGPSRLRRLFCSSVPSFIPPPIPGNVPARETAEPNCNLFVSGLNKRTTTEKLQEAFSAFGEVVHARVVTDRVSGFSKGFGFVRYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRQPFPPPNNFNTPPYGRQ* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00346 144 SMART rrm1_1 49 122 IPR000504 GO:0003723
Pte17g00346 144 FunFam RNA recognition motif-containing protein 27 138 - -
Pte17g00346 144 SUPERFAMILY RNA-binding domain, RBD 28 142 IPR035979 GO:0003676
Pte17g00346 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 116 IPR000504 GO:0003723
Pte17g00346 144 Gene3D - 33 130 IPR012677 -
Pte17g00346 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Pte17g00346 144 PANTHER NUCLEOLAR PROTEIN 8 32 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00346 Pte-Chr17 4507631 4510890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00346 49 128 Eukaryotic Initiation Factors Gene Family AT2G23350 36.250 1.34e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00346 - - pmum:103326359 185.267