Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00322 ATGTTGCATTCGGGGAAGCCTGCTTCTGAGCCAGGGATGGATGCTCTTAACCATCGGTTGAGGGACTCATTGAGCTGTGAAGTGAACAAGCCAGATTTTAGAGAACTCGATCTGGGTTCATCTGTTACGCCTTTGAGGCCTCGACAGAGTGGACAAGCTGCTAGTGGATTGACTACCACAACTAGTAGTAGTTCTGGTTCGTCTGGATCTGTATCTGGGCGTAATGGGCACAACCCAGCTGCCAAAAGGTCTGATTCCGGTCACAACAGTCACTCAGGTGAGCTTTCTGGGTCTAGCGAGAATAGTCCAACTGCCACCGAGAGCATGCACTCCGGTGGAACAGTCAGAAATTCCAAAACGGGTCATACGAGATCCAATTCAGGTCCTACACAACCGTTAGTTTGTTCGGGTCAAAGCTCAGTCAATTCGCCGCCGCTCAATATGCTCCCAACTGGGAATATTTGTCCATCTGGGAAGATTTTGAAGACGGGTATGTCGGCTCCCAATCGGAGCTCAAAAACCGACATTCTGGGCTCTGGGAGTGGTAATTATGGCCATGGAAGCATAATGCGGGGTGGTGTGCCAGCCAAAAGTGGTGGAGGAGAGACCCCCAGACTAACAAATGTGAAAGCTGGTGGCAGTGTTGTTGTTGGTGGTGTCAGTGACTCAACAAAGAGATCAATGCTGGATGTGAACCCTGAAGAGCTGAAGAGAGCTGGGAATGAGCAGTACAAAAGAGGGCATTTTAATGAGGCTTTGAATCTGTATGATCGCGCAATTGCTTTATCGCCAGCCAATGCAGCTTACCGGAGTAACAGGGCAGCGGCATTGATGAATTTAGGACGGTTAGGTGAGGCAGTGAGAGAATGCGAAGAGGCTGTGAGGTTAGATCCTCATTACACAAGGGCACATCAGCGTTTGGCTTCTCTTCTTCTCCGGTTAGGACAAGTTGAGAATGCAAGAAAGCATCTTTGTTATCCTGGGTCCCAGCCGGATCACTATGAGATGCAGAAGTTGCAATTGTTGGAGAAGCATTTGACCAAATGTACAGATGCCCGACGATTAAGTGACTGGAGAACTGTACTTCGGGAAATCGATGCTGCTGTTTCTGCTGGAGCCGATTCTTCTCCCCAGCTCTTTTTGTGTAGAGCGGAAGCGCTCTTAAAGCTGAACCAAATTGGTGATGCTGAATCCAGTATATCAAACATCCTGAAAGTGGAACCATATACCAGTTCCTGTTCGCAGGCAAGGTTTTTTGGAATGCTTTCCGAAGCTTATAACTGCTTTGTCCGTGCTCAGATTGAGATGGAATTAGGGCGGTTTGACAGTGCAGTTACATTTATGGAGAAAGCTGCACATATAGATCCCTGTAATATTGAAATTGCTGTTTTGCTTAAGAACGTTAGACTGGTAGCCAGAGCTCGTGCACGAGGAAATGACCTATTTAAATCTGAAAGGTTCACTGAAGCATGCTCAGCATATGGGGAAGGTCTGCGGTTTGATCCTTCAAACGCATTGCTATATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGCAATTGGGAACGATCAATTGATGATTCCAATCAAGCTTTACGTATCCAACCCAATTATATAAAGGCACTTCTTCGAAGGGCTGCATCAAACAGCAAGTTAGAAAGATGGGCAGAAGCAATCAGTGATTATGAGGCCTTGAGGAGAGATTTTCCAGATGACAATGAAGTTGCTGAAGCTTTATTCCATGCCCAAGTTGCATTGAAGAAGTCTCGTGGAGAAGACGTCCAAAACATGAAATTTGGTGGTGAAGTCGAAGAAGTATCGGGACTTGATCAATTCAAAGCTGGAATAGCATCACCTGGAATATCAGTTGTCCATTTTGGAACCGCCACTAGTTCTCAGTGCCAGCAAATATCTCCATTCCTGAATATGTTATGCAGCCGCTATCCATCGATAAACTTTCTAAAGGTTGACATCGACGAGAGCCCAGCAATAGCAAAGTTCGAGAATGTGAAAGTTGTACCAACAGTCAAGGTTTACAAAGATGGTAGCCTACTGAAGGAAATTAGTTGCCCTACTTGCGACGTGTTGGAATATTCAGTGGGGCAGTACAACTTTTAA 2118 0.4603 MLHSGKPASEPGMDALNHRLRDSLSCEVNKPDFRELDLGSSVTPLRPRQSGQAASGLTTTTSSSSGSSGSVSGRNGHNPAAKRSDSGHNSHSGELSGSSENSPTATESMHSGGTVRNSKTGHTRSNSGPTQPLVCSGQSSVNSPPLNMLPTGNICPSGKILKTGMSAPNRSSKTDILGSGSGNYGHGSIMRGGVPAKSGGGETPRLTNVKAGGSVVVGGVSDSTKRSMLDVNPEELKRAGNEQYKRGHFNEALNLYDRAIALSPANAAYRSNRAAALMNLGRLGEAVRECEEAVRLDPHYTRAHQRLASLLLRLGQVENARKHLCYPGSQPDHYEMQKLQLLEKHLTKCTDARRLSDWRTVLREIDAAVSAGADSSPQLFLCRAEALLKLNQIGDAESSISNILKVEPYTSSCSQARFFGMLSEAYNCFVRAQIEMELGRFDSAVTFMEKAAHIDPCNIEIAVLLKNVRLVARARARGNDLFKSERFTEACSAYGEGLRFDPSNALLYCNRAACWFKLGNWERSIDDSNQALRIQPNYIKALLRRAASNSKLERWAEAISDYEALRRDFPDDNEVAEALFHAQVALKKSRGEDVQNMKFGGEVEEVSGLDQFKAGIASPGISVVHFGTATSSQCQQISPFLNMLCSRYPSINFLKVDIDESPAIAKFENVKVVPTVKVYKDGSLLKEISCPTCDVLEYSVGQYNF* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00322 705 FunFam TPR repeat-containing thioredoxin TTL4 597 704 - -
Pte17g00322 705 Pfam Tetratricopeptide repeat 476 537 - -
Pte17g00322 705 Pfam Tetratricopeptide repeat 428 456 IPR019734 GO:0005515
Pte17g00322 705 Gene3D Tetratricopeptide repeat domain 232 591 IPR011990 GO:0005515
Pte17g00322 705 SUPERFAMILY Thioredoxin-like 508 703 IPR036249 -
Pte17g00322 705 Pfam TPR repeat 240 281 - -
Pte17g00322 705 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 700 IPR044534 -
Pte17g00322 705 SUPERFAMILY TPR-like 232 460 IPR011990 GO:0005515
Pte17g00322 705 SMART tpr_5 377 410 IPR019734 GO:0005515
Pte17g00322 705 SMART tpr_5 267 300 IPR019734 GO:0005515
Pte17g00322 705 SMART tpr_5 539 572 IPR019734 GO:0005515
Pte17g00322 705 SMART tpr_5 425 458 IPR019734 GO:0005515
Pte17g00322 705 SMART tpr_5 505 538 IPR019734 GO:0005515
Pte17g00322 705 SMART tpr_5 471 504 IPR019734 GO:0005515
Pte17g00322 705 SMART tpr_5 233 266 IPR019734 GO:0005515
Pte17g00322 705 ProSiteProfiles TPR repeat profile. 505 538 IPR019734 GO:0005515
Pte17g00322 705 Pfam Thioredoxin 610 688 IPR013766 -
Pte17g00322 705 ProSiteProfiles TPR repeat profile. 233 266 IPR019734 GO:0005515
Pte17g00322 705 Pfam Tetratricopeptide repeat 541 571 IPR019734 GO:0005515
Pte17g00322 705 CDD TRX_family 610 691 - -
Pte17g00322 705 MobiDBLite consensus disorder prediction 43 147 - -
Pte17g00322 705 Gene3D Glutaredoxin 595 703 - -
Pte17g00322 705 MobiDBLite consensus disorder prediction 29 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00322 Pte-Chr17 4257164 4260948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00322 470 541 U-box Gene Family AT3G07370 33.333 3.01e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00322 - - qsa:O6P43_029173 1034.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00322 17 4257164 4260948 Pte17g00322 17 4257164 4260948 RCT