Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00319 ATGGAGGAAAATCTGCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAACTCATTGTCTATTATCTGACACAGAAAGTATCTGATTCCAGTTTTACTTCCAGAGCTATAGCTGTTGTTGACCTCAAAAAATGTGAACCTTGGGACCTCCCAGGTAAGGCTTCCATGGGGGAGAAAGAATGGTACTTCTTCAACTTGAGAGATCGAAAGTATCCAACTGGACTTCGAACCAATCGTGCTACTGAATCGGGTTACTGGAAAACTACAGGCAAAGACAAGGAGATCTTCCATACAGGTGTTCTGGTCGGAATGAAGAAGACACTAGTGTTCTACAAGGGTAGAGCTCCAAGGGGTGAGAAAAGCAACTGGGTAATGCATGAGTACAGGCTTGAAAATAAGCACCCTTTGAAATCTACAAAGGAAGAATGGGTGGTTTGCAGGGTCTTCCAAAAGATGTTAGCAGTAAAAAAGCCACAGCAGACACTATCATCCCAGCCATCGCTTGATGAATCACATTGTGAGGCACACTCAATTGCAAATGAATTTGGAGACGTCAAGCCGCAAAACCTAATTAACAGTACCATCACAAACTCATCCACCCCACTTGGCAATATTATGTCATCACAAAATTATAATAGCGATATTAGTGAAGTTAACACGAACATGAACTTGAACATGAACTGGCCTATTACAAGTGATCAGCTCCCAACACTTCCTTCACTTCAGTGGCCTCCAGGGTTACTGAGCACAAACCTTTCAGTCAATTCCTTGCTGCTCAAGGCATTGCAACTGAAGAGCACTCTACAATCAAGAGAAACTACAACCGCACTTCATAATTATGCTTACATGCCACAACAGCCTCAACAGCCCACTTCACACATTGGAAATGAATTGATGAGTTCAGACTTCAATGCTTCTTCCTCAAAGGTATTAGATTACATGGCGCCACAGCAGCAGCAGCAGCAGCCGGAGCAACCATTCAATTTGGACTCTATTAATTGGTGA 1005 0.4308 MEENLPPGFRFHPTDEELIVYYLTQKVSDSSFTSRAIAVVDLKKCEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATESGYWKTTGKDKEIFHTGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHPLKSTKEEWVVCRVFQKMLAVKKPQQTLSSQPSLDESHCEAHSIANEFGDVKPQNLINSTITNSSTPLGNIMSSQNYNSDISEVNTNMNLNMNWPITSDQLPTLPSLQWPPGLLSTNLSVNSLLLKALQLKSTLQSRETTTALHNYAYMPQQPQQPTSHIGNELMSSDFNASSSKVLDYMAPQQQQQQPEQPFNLDSINW* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00319 334 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 256 - -
Pte17g00319 334 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Pte17g00319 334 FunFam NAC domain-containing protein 100-like 14 155 - -
Pte17g00319 334 MobiDBLite consensus disorder prediction 314 334 - -
Pte17g00319 334 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Pte17g00319 334 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Pte17g00319 334 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00319 Pte-Chr17 4212286 4214522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00319 1 332 NAC Transcription Factor Family AT3G18400 53.254 8.19e-107 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte17g00319 NAM 2.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00319 - - gmx:100787111 430.254