Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00304 ATGTCGTTGAGGAAGGTCTTTCGTTCTAGGAGGCTCTCCAGATCGTTCCAGGAGACGAGGGGTGTGGAGGAAGATCGGGGAAGGAATAGAGTTGTTGATAACGCGGAGGAGGATAAGTCCACTGATTCAGGGGAGTATGGGACATCTTGGTCGTCGTTATTACCTGAGCTCCTTGGGGAGATCATTCAGCGAGTTGAGGTGAGTGAGGAGCGATGGCCTCAACGGCAAGACGTCGTCGCTTGTGCTTGTGTGTGCAAAAGATGGAGAGACACGACAAAAGAGATAGTGCGCTCTGCTGCTGACAATGGCAAAATTACTTTCCCTCCTTGTCTCAAACAGCCAGGACCTCCGGACATGCCAAGCCAGTGTCTTATTAAGCGGAACAAGAAGACCTCGACATTTTACCTATATCTTGCTCTTACACCATCATTCACAGACAAAGGGAAGTTTCTTCTAGCAGCTAAAAGGGTCAGACACGGTTCTCACATAGAATACATCATATCCCTTGATGCTGATGACATATCTCAAGGAAGTAATGCATATGTCGGAAAGTTAAGGTCAGATTTTCTCGGAATCAACTTCACAATCTATGACAGCCAACCTCCTCATAGTGGTGCAAAGCCATCAAATTTCAAGTCTAGACGACATTTTGTCAGCAAGCAGATAAGCCCCCAAGTTTCGGCAAGCAACTTTGAGGTAGGACAGGTATCGTACAAGTTCAATCTCTTGAAGTCAAGAGGACCGCGAAGGATGGTATGCTCCATCAAGTGTGCAACGACGGGAGAAACTGCTGATAGCAATTCTCTGAACAAGGATAAGATGAGCAAAGCAGAACTTGCTAGCTCTGGGTATTCGATATTGAACAACAAAGCTCCGAGGTGGCATGAGCATTTGCAATGTTGGTGCTTAAATTTCCATGGTCGTGTAACTGTTGCATCAGTTAAGAATTTTCAACTGGCTGCTACCGTTGATCCAAGCCAGCCAGGTGGTAAAGGGGATGAGGAGACAGTCCTCCTCCAGTTTGGGAAGGTAGGCGATGATGTTTTCACCATGGACTACAGGCAGCCGCTGTCTGCATTTCAGGCCTTCGCAATATGTCTCACAAGCTTTGGCACTAAACTTGCATGTGAATAA 1134 0.4683 MSLRKVFRSRRLSRSFQETRGVEEDRGRNRVVDNAEEDKSTDSGEYGTSWSSLLPELLGEIIQRVEVSEERWPQRQDVVACACVCKRWRDTTKEIVRSAADNGKITFPPCLKQPGPPDMPSQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAAKRVRHGSHIEYIISLDADDISQGSNAYVGKLRSDFLGINFTIYDSQPPHSGAKPSNFKSRRHFVSKQISPQVSASNFEVGQVSYKFNLLKSRGPRRMVCSIKCATTGETADSNSLNKDKMSKAELASSGYSILNNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLAATVDPSQPGGKGDEETVLLQFGKVGDDVFTMDYRQPLSAFQAFAICLTSFGTKLACE* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00304 377 CDD F-box_AtTLP-like 50 94 - -
Pte17g00304 377 SUPERFAMILY Tubby C-terminal domain-like 103 377 IPR025659 -
Pte17g00304 377 PANTHER TUBBY-RELATED 24 375 - -
Pte17g00304 377 Gene3D Tubby Protein; Chain A 107 377 IPR025659 -
Pte17g00304 377 ProSitePatterns Tub family signature 1. 305 318 IPR018066 -
Pte17g00304 377 ProSitePatterns Tub family signature 2. 362 377 IPR018066 -
Pte17g00304 377 Gene3D - 44 97 - -
Pte17g00304 377 SUPERFAMILY F-box domain 48 92 IPR036047 GO:0005515
Pte17g00304 377 Pfam F-box domain 50 96 IPR001810 GO:0005515
Pte17g00304 377 MobiDBLite consensus disorder prediction 18 43 - -
Pte17g00304 377 MobiDBLite consensus disorder prediction 18 48 - -
Pte17g00304 377 PRINTS Tubby superfamily signature 334 353 IPR000007 -
Pte17g00304 377 PRINTS Tubby superfamily signature 305 321 IPR000007 -
Pte17g00304 377 PRINTS Tubby superfamily signature 165 181 IPR000007 -
Pte17g00304 377 PRINTS Tubby superfamily signature 287 304 IPR000007 -
Pte17g00304 377 PRINTS Tubby superfamily signature 230 257 IPR000007 -
Pte17g00304 377 PRINTS Tubby superfamily signature 355 377 IPR000007 -
Pte17g00304 377 PRINTS Tubby superfamily signature 181 205 IPR000007 -
Pte17g00304 377 Pfam Tub family 111 372 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00304 Pte-Chr17 4080990 4084184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00304 1 378 TUB Transcription Factor Family AT1G53320 68.653 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte17g00304 Tub 2.7e-98 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00304 K19600 - qsa:O6P43_001049 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00304 17 4080990 4084184 Pte17g00304 17 4080990 4084184 RCT