Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00303 ATGGCTGGGGTTGGACCAATCTCGCAGGACTGGGAACCGGTGGTCATCCGAAAGAAGGCACCAACTGCTGCAGCGAAGAAGGATGAGAAAGTTGTGAACGCTGCTCGTCGTATGGGAGCTGAGATTGAGACCGTGAAAAAAGCAACTGCTGGAACAAATAAAGCTGCCTCCAGTAGCACCACTTTGAATACAAGAAAGCTTGATGAGGACACAGAGAACCTTCACCATGATAGGGTACCGACTGAATTGAAGAAAGCCATCATGCAAGCACGTATGGATAAGAAACTTACCCAATCTCAACTGGCTCAGCTGATAAATGAGAAACCCCAAATCATCCAAGAGTATGAATCTGGGAAAGCTATTCCAAATCAACAGATCATTGGTAAACTGGAGAGAGCTCTTGGTGCAAAACTGCGTGGGAAGAAGTGA 429 0.4662 MAGVGPISQDWEPVVIRKKAPTAAAKKDEKVVNAARRMGAEIETVKKATAGTNKAASSSTTLNTRKLDEDTENLHHDRVPTELKKAIMQARMDKKLTQSQLAQLINEKPQIIQEYESGKAIPNQQIIGKLERALGAKLRGKK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00303 142 Coils Coil 87 107 - -
Pte17g00303 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Pte17g00303 142 Gene3D - 71 142 IPR010982 GO:0003677
Pte17g00303 142 CDD HTH_XRE 85 135 IPR001387 -
Pte17g00303 142 SMART mbf_short4 86 141 IPR001387 -
Pte17g00303 142 SUPERFAMILY lambda repressor-like DNA-binding domains 80 138 IPR010982 GO:0003677
Pte17g00303 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 3 142 - -
Pte17g00303 142 FunFam Multiprotein bridging factor 1 71 142 - -
Pte17g00303 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Pte17g00303 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00303 Pte-Chr17 4077828 4080230 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Pte17g00303 MBF1 3.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00303 K03627 - qsa:O6P43_001048 267.7