Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00294 ATGGGAGGTGGGTTTAGAGTCCTTCATCTAGTCAGACCATTTCTCTCATTTCTGCCTGAAGTTCAGAGTGCTGACAGGAAAGTCCCATTTAGAGAGAAGGTCATATACACTGTGATCTCTCTCTTCATTTTCCTGGTTTGCAGTCAACTTCCTCTCTATGGAATACACTCAACAACAGGTGCAGATCCATTCTACTGGATGCGTGTTATCCTTGCCTCAAACAGAGGGACAGTCATGGAACTTGGAATCACCCCCATTGTTACTTCTGGATTGGTGATGCAACTTCTTGCTGGATCAAAAATAATTGAAGTGGACAACAATGTCCGTGAAGATCGTGCCCTCTTAAATGGAGCACAGAAGTTACTTGGCATTTTGATTGCTGTTGGTGAGGCGGTTGCCTATGTCCTTTCTGGGATGTATGGCAGTGTGAGCCAGCTTGGAGTAGGGAATGCGATACTGATCATCATTCAGCTGTGCTTTGCTGGTATCATTGTTATATGCTTGGATGAACTACTTCAGAAAGGATATGGTTTGGGCTCTGGAATTTCCCTTTTCATTGCAACAAACATTTGTGAAAACATCATCTGGAAGGCATTCAGCCCCACTACCATTAATAGTGGGCGGGGAGCTGAATTTGAAGGAGCTGTCATAGCTCTTTTCCATTTACTTATTACACGGAGTGATAAGGTCCGAGCTCTTCGTGAGGCCTTTTACCGGCAAAATCTTCCAAATGTTACGAATCTGCTTGCTACCGTCTTAGTCTTCCTGATCGTGATATACTTCCAAGGGTTCCGTGTCGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACAGCAGGGTTCATATCCTATTAAACTCTTCTACACCTCCAACATGCCCATTATTCTACAATCAGCCCTTGTTTCCAATCTCTACTTCATCTCTCAGTTGCTCCACCGGAAGTACAGTGGCAATTTCTTTGTCAACCTTTTGGGTAAATGGAAGGACTCTGAGTACGGTGGTCAGTCAGTTCCTGTAGGTGGTATTGCTTATTACATCACTGCACCATCAAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCACTGTTCTATCTTGTTTTCATGTTGTCAGCCTGTGCTTTGTTCTCAAAAACTTGGATTGAAGTTTCTGGTTCATCCGCTAGAGATGTTGCCAAGCAGCTCAAGGAACAACAAATGGTGATGCCTGGACACCGTGAGTCAAACTTGCAGAAAGAGCTTAATCGGTACATTCCAACTGCTGCAGCATTCGGAGGCATGTGTATTGGTGCATTGACCGTGTTAGCTGACTTCATGGGAGCAATTGGTTCGGGGACAGGTATTCTGCTTGCAGTGACAATCATCTATCAATACTTCGAGACCTTCGAGAAGGAAAGAGCTAGTGAGCTTGGGTTCTTTGGCTTTTAG 1428 0.4468 MGGGFRVLHLVRPFLSFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVSQLGVGNAILIIIQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRSDKVRALREAFYRQNLPNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFFVNLLGKWKDSEYGGQSVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00294 475 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 18 469 IPR002208 GO:0015031|GO:0016020
Pte17g00294 475 SUPERFAMILY Preprotein translocase SecY subunit 10 465 IPR023201 -
Pte17g00294 475 ProSitePatterns Protein secY signature 1. 77 96 IPR030659 -
Pte17g00294 475 FunFam Transport Sec61 subunit alpha isoform 2 9 473 - -
Pte17g00294 475 Pfam Plug domain of Sec61p 42 76 IPR019561 -
Pte17g00294 475 Pfam SecY 77 458 IPR002208 GO:0015031|GO:0016020
Pte17g00294 475 Gene3D SecY subunit domain 9 473 IPR023201 -
Pte17g00294 475 PIRSF SecY_Sec61alpha 8 470 IPR002208 GO:0015031|GO:0016020
Pte17g00294 475 NCBIfam preprotein translocase subunit SecY 31 466 IPR002208 GO:0015031|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00294 Pte-Chr17 3999884 4003212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00294 1 476 Miscellaneous Gene Families AT2G34250 93.487 0.0 914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00294 K10956 - qsa:O6P43_029204 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00294 17 3999884 4003212 Pte17g00294 17 3999884 4003212 RCT