Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte17g00279 | ATGGACATGAATAATTTTCATGGCTTACCCCCTCTGAAAAGATTCAGACTTCTTCAGCAGCAGCAAGCAACCGACGAAGCCAATGCAGTTGGCGCTTCTCCTTTACCGACAAAGAAGCGTAAGGAGACTCGACACTCAGCTTTCTCCTCACTTGACCCAACACCGCCTTTCTCTGCTTTCTCTTCTAGTATCTACTCGTTGCCGGCCAAGAAAAGGGTGTGGGCTCTTCAACCCGACTTCAATCCTGACAAAACCGCTTCATCTTTTGATCTCAATGTTGAATATAAACCGTCTCCTGATCCAGATCCAACAGAAACTGAAGCTATAAATCATGATAAATCTGCTCTTTGGAGCGAACAGACCCAATTGGATGAAAGGGACGGTGGGAATGTGGATGGTGGCTGTGACGAGGATGATGGGGTTCTATGTGCTGTTTGTCAGAGCACAGACGGGGATCCTTTAGATCCAATTGTGTTTTGCGATGGGTGTGATTTAATGGTTCATGCTACCTGCTATGGTAACCCTCTTGTGAAGGGTATCCCGGAAGGTGATTGGTTTTGCAATCAGTGTCTGGTGAAGAAAAATAATGGAAGCTTTAATTGTTGTCTATGTCCTATTGAAGATGGGGCAATGAAACCCACCACAAATGGGAAGTGGGCACATATTGTTTGTGCACTTTTGATTCCTGAAGTGTTCTTTGATGACCCAGAAGGCAGAGAAGGTATTAATTGCTCTAAGGTTCCGCAGAAAAGGTATATGGAGACATGTTATATTTGTGACAGTGTAAAAGGATGTGCCATTGTTTGTTCTGAGCCTAAATGCTCTTTGGCCTTTCATGTGACTTGTGGATTGAACGAGGATCTGTGTATTGAGTACAGGCAGGGGAAGAAGACAGGTACTATTGTTGCTGGGTTTTGTAAGCACCACTCTCAACTGTGGATTAAGCAACAAGATACAGGAAAATTTAAGATTGTTTCCGTAGACTGCAAGTAA | 993 | 0.4391 | MDMNNFHGLPPLKRFRLLQQQQATDEANAVGASPLPTKKRKETRHSAFSSLDPTPPFSAFSSSIYSLPAKKRVWALQPDFNPDKTASSFDLNVEYKPSPDPDPTETEAINHDKSALWSEQTQLDERDGGNVDGGCDEDDGVLCAVCQSTDGDPLDPIVFCDGCDLMVHATCYGNPLVKGIPEGDWFCNQCLVKKNNGSFNCCLCPIEDGAMKPTTNGKWAHIVCALLIPEVFFDDPEGREGINCSKVPQKRYMETCYICDSVKGCAIVCSEPKCSLAFHVTCGLNEDLCIEYRQGKKTGTIVAGFCKHHSQLWIKQQDTGKFKIVSVDCK* | 331 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte17g00279 | 330 | CDD | PHD_BRPF_JADE_like | 142 | 190 | - | - | |
Pte17g00279 | 330 | PANTHER | PHD FINGER PROTEINS | 93 | 310 | - | - | |
Pte17g00279 | 330 | SMART | PHD_3 | 255 | 310 | IPR001965 | - | |
Pte17g00279 | 330 | SMART | PHD_3 | 142 | 191 | IPR001965 | - | |
Pte17g00279 | 330 | Pfam | PHD-finger | 143 | 191 | IPR019787 | - | |
Pte17g00279 | 330 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 196 | IPR013083 | - | |
Pte17g00279 | 330 | MobiDBLite | consensus disorder prediction | 94 | 127 | - | - | |
Pte17g00279 | 330 | ProSiteProfiles | Zinc finger PHD-type profile. | 140 | 193 | IPR019787 | - | |
Pte17g00279 | 330 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 197 | 312 | IPR013083 | - | |
Pte17g00279 | 330 | MobiDBLite | consensus disorder prediction | 19 | 52 | - | - | |
Pte17g00279 | 330 | Pfam | PHD-zinc-finger like domain | 200 | 309 | - | - | |
Pte17g00279 | 330 | SUPERFAMILY | FYVE/PHD zinc finger | 135 | 206 | IPR011011 | - | |
Pte17g00279 | 330 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 198 | 310 | IPR034732 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte17g00279 | Pte-Chr17 | 3902198 | 3903376 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte17g00279 | 20 | 326 | C2H2 Transcription Factor Family | AT3G14740 | 53.727 | 4.42e-115 | 335 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Pte17g00279 | zf-HC5HC2H_2 | 1.8e-27 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte17g00279 | K11380 | - | qsa:O6P43_001103 | 437.187 |