Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00279 ATGGACATGAATAATTTTCATGGCTTACCCCCTCTGAAAAGATTCAGACTTCTTCAGCAGCAGCAAGCAACCGACGAAGCCAATGCAGTTGGCGCTTCTCCTTTACCGACAAAGAAGCGTAAGGAGACTCGACACTCAGCTTTCTCCTCACTTGACCCAACACCGCCTTTCTCTGCTTTCTCTTCTAGTATCTACTCGTTGCCGGCCAAGAAAAGGGTGTGGGCTCTTCAACCCGACTTCAATCCTGACAAAACCGCTTCATCTTTTGATCTCAATGTTGAATATAAACCGTCTCCTGATCCAGATCCAACAGAAACTGAAGCTATAAATCATGATAAATCTGCTCTTTGGAGCGAACAGACCCAATTGGATGAAAGGGACGGTGGGAATGTGGATGGTGGCTGTGACGAGGATGATGGGGTTCTATGTGCTGTTTGTCAGAGCACAGACGGGGATCCTTTAGATCCAATTGTGTTTTGCGATGGGTGTGATTTAATGGTTCATGCTACCTGCTATGGTAACCCTCTTGTGAAGGGTATCCCGGAAGGTGATTGGTTTTGCAATCAGTGTCTGGTGAAGAAAAATAATGGAAGCTTTAATTGTTGTCTATGTCCTATTGAAGATGGGGCAATGAAACCCACCACAAATGGGAAGTGGGCACATATTGTTTGTGCACTTTTGATTCCTGAAGTGTTCTTTGATGACCCAGAAGGCAGAGAAGGTATTAATTGCTCTAAGGTTCCGCAGAAAAGGTATATGGAGACATGTTATATTTGTGACAGTGTAAAAGGATGTGCCATTGTTTGTTCTGAGCCTAAATGCTCTTTGGCCTTTCATGTGACTTGTGGATTGAACGAGGATCTGTGTATTGAGTACAGGCAGGGGAAGAAGACAGGTACTATTGTTGCTGGGTTTTGTAAGCACCACTCTCAACTGTGGATTAAGCAACAAGATACAGGAAAATTTAAGATTGTTTCCGTAGACTGCAAGTAA 993 0.4391 MDMNNFHGLPPLKRFRLLQQQQATDEANAVGASPLPTKKRKETRHSAFSSLDPTPPFSAFSSSIYSLPAKKRVWALQPDFNPDKTASSFDLNVEYKPSPDPDPTETEAINHDKSALWSEQTQLDERDGGNVDGGCDEDDGVLCAVCQSTDGDPLDPIVFCDGCDLMVHATCYGNPLVKGIPEGDWFCNQCLVKKNNGSFNCCLCPIEDGAMKPTTNGKWAHIVCALLIPEVFFDDPEGREGINCSKVPQKRYMETCYICDSVKGCAIVCSEPKCSLAFHVTCGLNEDLCIEYRQGKKTGTIVAGFCKHHSQLWIKQQDTGKFKIVSVDCK* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00279 330 CDD PHD_BRPF_JADE_like 142 190 - -
Pte17g00279 330 PANTHER PHD FINGER PROTEINS 93 310 - -
Pte17g00279 330 SMART PHD_3 255 310 IPR001965 -
Pte17g00279 330 SMART PHD_3 142 191 IPR001965 -
Pte17g00279 330 Pfam PHD-finger 143 191 IPR019787 -
Pte17g00279 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 196 IPR013083 -
Pte17g00279 330 MobiDBLite consensus disorder prediction 94 127 - -
Pte17g00279 330 ProSiteProfiles Zinc finger PHD-type profile. 140 193 IPR019787 -
Pte17g00279 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 312 IPR013083 -
Pte17g00279 330 MobiDBLite consensus disorder prediction 19 52 - -
Pte17g00279 330 Pfam PHD-zinc-finger like domain 200 309 - -
Pte17g00279 330 SUPERFAMILY FYVE/PHD zinc finger 135 206 IPR011011 -
Pte17g00279 330 ProSiteProfiles Extended PHD (ePHD) domain profile. 198 310 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00279 Pte-Chr17 3902198 3903376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00279 20 326 C2H2 Transcription Factor Family AT3G14740 53.727 4.42e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte17g00279 zf-HC5HC2H_2 1.8e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00279 K11380 - qsa:O6P43_001103 437.187