Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00274 ATGAGGTTTCTGGATTCCATAGGAAAATGGAGAAGCATAGCAAAAGAGGCAGTAGAACGAACTGGGATTGTAGCAAAGTTCCTGTGCTTATTGCACGTGACAAACAACTACATTTGCTCCCCGACTCTGGTTTACGGTCCAAGTATGCTCCCTACTCTGAATCTTACCGGTGATGTGTTGTTAACTGAGCATGTGTCACCCCGGCTTGGGAAGGTTCAGCGTGGAGACGTGGTTCTGGTTCGGTCACCGTGGAACCCTAACCGAACGGTGACTAAGCGCATTGTGGGTATGGAAGGTGATAGAGTCACTTTCTTGGTGGACCCTAAGATGAGCGATAGAACTCGGACTACTGTGGTACCAAAAGGGCATGTCTGGATCCAAGGGGATAACATCTATGCCTCTTGTGACTCACGGGATTTTGGTCCTGTTCCTTATGGTCTCATTGGAGGAAAAGTGTTTTTCAGGGTTTGGCCACCTGATTGCTTTGGACCATTGGTTCGATGA 504 0.4821 MRFLDSIGKWRSIAKEAVERTGIVAKFLCLLHVTNNYICSPTLVYGPSMLPTLNLTGDVLLTEHVSPRLGKVQRGDVVLVRSPWNPNRTVTKRIVGMEGDRVTFLVDPKMSDRTRTTVVPKGHVWIQGDNIYASCDSRDFGPVPYGLIGGKVFFRVWPPDCFGPLVR* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00274 167 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pte17g00274 167 PRINTS Bacterial leader peptidase 1 (S26A) family signature 119 138 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pte17g00274 167 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pte17g00274 167 SUPERFAMILY LexA/Signal peptidase 37 165 IPR036286 -
Pte17g00274 167 CDD S26_SPase_I 40 152 IPR019533 GO:0004252|GO:0006465
Pte17g00274 167 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 9 165 - -
Pte17g00274 167 FunFam Inner membrane protease subunit 1 35 164 - -
Pte17g00274 167 Gene3D Umud Fragment, subunit A 34 162 - -
Pte17g00274 167 Pfam Signal peptidase, peptidase S26 24 104 IPR019533 GO:0004252|GO:0006465
Pte17g00274 167 Pfam Signal peptidase, peptidase S26 112 157 IPR019533 GO:0004252|GO:0006465
Pte17g00274 167 NCBIfam signal peptidase I 27 104 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00274 Pte-Chr17 3771620 3774831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00274 49 165 MADS-box Gene Family AT1G29960 56.410 3.29e-44 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00274 K09647 - cave:132173278 273.092