Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00245 ATGAGCAGCAATATAAGCATGGTGGAAGCCAAGCTACCACCTGGGTTCAGGTTTCATCCTAAAGATGAAGAACTTGTCTGCGACTACTTGATGAAGAAGGTCTCACACACTGGCTCTCCTCTTCTGATCGATATTGACCTCAACAAGTGCGAACCATGGGATATTCCTGACACGGCTTGTGTGGGCGGTAAAGAATGGTACTTGTACACATTGAGAGATCGCAAGTATGCGAGTGGGCTGAGAACAAATAGAGCCACTGCATCAGGCTATTGGAAGGCCACGGGAAAGGACAGACCTATCCTTCGTAAGGGCACGTTGTTAGTTGGTATGAGAAAAACTTTGGTTTTCTACACCGGAAGAGCTCCCCAAGGACGGAAGACCGAATGGGTCATGCATGAGTTTAGGGTCGAAGGTCCCCTCGCCCCTCCCACAATTTCTCCCACCAAGGAAGATTGGGTTTTGTGTAGGGTGTTTCATAAGAACAGAGAAGATTCAGCCAAATCTTCTAGCATGCAAATCTGCCACGATGACACATGCTCTTCAACTCTGCCACCATTAATGGACTCTTACATCAGTTTCAACCAAACTCAAGCACATATAGATGCCTATGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCCAAACCAAACCAACACAATTTCCAATCACTCGATATATGTAACATTGACGTAA 693 0.4618 MSSNISMVEAKLPPGFRFHPKDEELVCDYLMKKVSHTGSPLLIDIDLNKCEPWDIPDTACVGGKEWYLYTLRDRKYASGLRTNRATASGYWKATGKDRPILRKGTLLVGMRKTLVFYTGRAPQGRKTEWVMHEFRVEGPLAPPTISPTKEDWVLCRVFHKNREDSAKSSSMQICHDDTCSSTLPPLMDSYISFNQTQAHIDAYEQVPCFSIFSPNQTNTISNHSIYVTLT* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00245 230 Gene3D NAC domain 21 165 IPR036093 GO:0003677|GO:0006355
Pte17g00245 230 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 194 - -
Pte17g00245 230 SUPERFAMILY NAC domain 3 161 IPR036093 GO:0003677|GO:0006355
Pte17g00245 230 Pfam No apical meristem (NAM) protein 13 136 IPR003441 GO:0003677|GO:0006355
Pte17g00245 230 ProSiteProfiles NAC domain profile. 12 160 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00245 Pte-Chr17 3286087 3290698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00245 3 217 NAC Transcription Factor Family AT1G56010 66.960 4.50e-105 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte17g00245 NAM 1.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00245 - - gmx:100170720 375.17