Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00238 ATGTCTCTTCCTCCGCCTCCTTTGTACCTAAACGTCGTCGGATCAGGTAATGCTGTCCCTGACACCTCTGCTACGTCTTCTTCTACTGTACCTTCTACTACGGCCACGGATCAACATACCTCCTCGTCTTGGAGAAACTTAAGCCCAAGCGTTCTCATTATCATCATAGTTCTCTCCGTTACTGTCATCGCCTCCGTTGTACTCTGCTTTCTCCTCCGCCATCTCAATCGCCGTTGCCTCCGGCATCTTTCTACTTCGTGGCGTTCATCTTCTGCCTCCACTTCCACTGCCAACGCGGTTCCTATCTTCTCCAGCCGCAGAATCTCGCCGCAAACACCGCAAGCAATTGTCATCGACTCTCTTCCGTCATTCACCTTCTCTTCCATTACACGTAGATCGAGTTCGTCCGTTTCTGGTGACTGTGCCGTTTGTCTGTCGAAATTTGAGAAGACCGACCGACTCAGGCTTCTCCCTCTCTGTTGCCACGCGTTTCATGCGGATTGCATTGATGTTTGGCTTTCATCAAACCTCACTTGTCCTCTTTGCCGCTCGTCCATCTTCACTTCGGATTCTGATCTCATGAAAGCTCTTCAGTCAGCGTCTGATGTTGGAAACAGTTTCAGGCTTGAGATCGGCAGCATCAGTCGTCGTGGAACGGTTACAGAACCACACATCAGTGGTGGTGGTGGTGGCAGTGAAGAGCGAAGTAGGTCAAGGTCGTTTTCAATCGGTTCTTTTGAATATCTCGTTGAAGAAGACTCAGAAGTCGCATTCAACAATGCGCACCGACGCACTGTCTCTGAAAACAAAGAAGAGACAACAACAGAAGCGTTGGAAGAGAATTTAGATGTCGATGTGGGTGGTGGAAGGGGTTGGATAAAGGACTATGTGGATCGAATATCTGCTTCCTTGTCTTCACGTGCAATGTCTTTCCGGAGCTCAGGCAGGTTCTTTACAGGTAGCAGTCGCCGGAGTGAGGTGTCAGGTGTCACAGAGTTGGACTTGGAAGCGAACAGAGTAGGAGAGGAAATCAGTGAATTGTTTCGTTGGTTGTCAGGGGTATGA 1065 0.4948 MSLPPPPLYLNVVGSGNAVPDTSATSSSTVPSTTATDQHTSSSWRNLSPSVLIIIIVLSVTVIASVVLCFLLRHLNRRCLRHLSTSWRSSSASTSTANAVPIFSSRRISPQTPQAIVIDSLPSFTFSSITRRSSSSVSGDCAVCLSKFEKTDRLRLLPLCCHAFHADCIDVWLSSNLTCPLCRSSIFTSDSDLMKALQSASDVGNSFRLEIGSISRRGTVTEPHISGGGGGSEERSRSRSFSIGSFEYLVEEDSEVAFNNAHRRTVSENKEETTTEALEENLDVDVGGGRGWIKDYVDRISASLSSRAMSFRSSGRFFTGSSRRSEVSGVTELDLEANRVGEEISELFRWLSGV* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00238 354 CDD RING-H2_EL5-like 140 183 - -
Pte17g00238 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 188 IPR013083 -
Pte17g00238 354 Pfam Ring finger domain 140 183 IPR001841 -
Pte17g00238 354 SMART ring_2 141 182 IPR001841 -
Pte17g00238 354 MobiDBLite consensus disorder prediction 20 43 - -
Pte17g00238 354 FunFam E3 ubiquitin-protein ligase ATL6 104 189 - -
Pte17g00238 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 43 260 - -
Pte17g00238 354 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Pte17g00238 354 MobiDBLite consensus disorder prediction 219 238 - -
Pte17g00238 354 SUPERFAMILY RING/U-box 117 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00238 Pte-Chr17 3102179 3103464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00238 51 186 Rapid Response to Elicitors AT2G35000 36.029 4.18e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00238 K10663 - qsa:O6P43_026856 362.459