Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00219 ATGGACAGCAACAATAAATATAAGGATGATTATCATGACGAAGATGCTCCAGTTCCAGGATTCAGATTCCATCCAACTGATGAAGAACTTGTTGGGTTTTATCTTCGTCGGAAGCTTGCCAAGAAGCCTCTCAGTCTAGAACTCATCAAACAGATTGACATCTACAAATATGATCCTTGGGATCTTCCAAAATTGACTAGTATAGCTGGCGAGAAGGAGCACTACTTCTTTTGCAGAAGAGGGAGAAAATATAGAAATAGTATTAGACCTAACCGTGTCACTGGTTCTGGATTCTGGAAAGCAACTGGGATCGATAAGCCTGTATATTCACAAAGAGGAGAAGGCCATGATTGCATTGGACTGAAGAAAACATTAGTTTACTACTGCGGCAGCGCAGGCAAAGGAACCAAAACCGATTGGATGATGCATGAATTTCGTCTTCCTTCCAATGGCAATAGTACAAATCCCCACAACAACAAGAATACAAATAATCTCCAAGAAGCGGAAATTTGGACACTCTGTCGAATTTTCAAACGAAATGCATCACACAAGAAGTTCATACCAGATTGGAAAGGATTGTCAGCTAAGCATCATTTAAATGATAAAAGCTCCAAGAGCAGTTCTACTTGCAGTGAGGATTCCAATAGTCAGGAAGCATATATTAGTTTTTGTTCTTCCAGATTTGATCTCCACGAACGAAAGCCTGAAATTGGATATACTGATCCGAGGAGCCACTTCTGGTATGGTGATCAATTAAGCTCATCAGTTACAGTGATTGGTGATCAGTTGAGTTCATTAGTTCCAGTTAGAGAACCACAACAGCCTACTGTAGATTCAAGTTGCTTCTGGGTTAATCAAGAGTCTGATGATTTATTCCCAAACGAGAACTGGGATGAGCTTGAGTCAGTTGTAAAGTTTGCTCTTGATCAGCTTTAA 936 0.4017 MDSNNKYKDDYHDEDAPVPGFRFHPTDEELVGFYLRRKLAKKPLSLELIKQIDIYKYDPWDLPKLTSIAGEKEHYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSQRGEGHDCIGLKKTLVYYCGSAGKGTKTDWMMHEFRLPSNGNSTNPHNNKNTNNLQEAEIWTLCRIFKRNASHKKFIPDWKGLSAKHHLNDKSSKSSSTCSEDSNSQEAYISFCSSRFDLHERKPEIGYTDPRSHFWYGDQLSSSVTVIGDQLSSLVPVREPQQPTVDSSCFWVNQESDDLFPNENWDELESVVKFALDQL* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00219 311 ProSiteProfiles NAC domain profile. 17 179 IPR003441 GO:0003677|GO:0006355
Pte17g00219 311 Gene3D NAC domain 26 184 IPR036093 GO:0003677|GO:0006355
Pte17g00219 311 Pfam No apical meristem (NAM) protein 19 147 IPR003441 GO:0003677|GO:0006355
Pte17g00219 311 SUPERFAMILY NAC domain 17 179 IPR036093 GO:0003677|GO:0006355
Pte17g00219 311 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 217 - -
Pte17g00219 311 FunFam NAC domain-containing protein 35 26 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00219 Pte-Chr17 2769826 2771783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00219 14 188 NAC Transcription Factor Family AT5G39820 58.730 1.35e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte17g00219 NAM 5.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00219 - - rcu:8272617 351.673