Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00214 ATGAGGGAAAGGGTTGAGTTTCTTCAGAAGATAGGTTTGACTATTGATGATATGAATGAGTACCCATTAATGCTGGCATGTAGTGTTAGAAAGAATATGGTACCTGTCCTGACATATTTGGAAAAAATTGGTATTTCGAGGTCAAAAGTTGGTGAATTTATTAAGAATTACCCACAGGTTTTACATGCCAGTGTGATTGTTGATCTTGTTCCTGTTGTTAAATTTCTTCGTGGACTTGATGTCGAGAGGCATGACATTGGTTATGTACTGCAGAAGTATCCTGAGCTTCTCGGATTTAAACTAGAAGGTACAATGAGTACTTCTGTGGCTTATCTTGTTAGTATTGGTGTGAGACCTCGAGACATTGGTCCAATGGTAACTCAGTATCCTTATCTTTTGGGAATGAGAGTTGGGAGCACGATTAAACCACTAATTGATTACTTAGTTTCTTTGGGATTGCCAAAGCAGATTTTGACTAGGATGTTGGAGAAGCGAGCTTATATACTTGGTTATGATCTTGAAGAAACTGTCAAACCTAATGTAGAATGCTTGGTTAGTTTTGGAGTAAGGAGGGAAGCATTGCCATCGGTTATAGCTCAGTATCCACAGATTATTGGATTGCCTCTGAAGGCCAAGCTTTCTTCACAACAGTATTTCTTTAGCTTAAAGCTCAAGATTGATCCTGAAGGGTTTGCGCGGGCAGTCGAAAAGATGCCTCAGATTGTGAGTCTTCAGCAATCTATAATTATGAAACCTGTGGACTTTTTACTTGGGAGGGCAATACCACCAGAAGATGTGGCCAACATGTTGGTCAGATGTCCTCAGCTGATAGCCTGTCGTGTTGAGCTCATGAAGAACAGTTATTACTTCCTTAAAACTGAAATGAGTAGACCAATGAAAGAGCTTGTGGAATTCCCTGAATATTTTACTTATAGTTTGGAATCTAGGATAAAGCCTAGATATCAAAGGTTGAAGAGCAAAGGCATTAGATTTTCTTTGAATTGGATGCTTAATTGTAGTGACCAGAGATTTGAAGAGAGACTGCAGGGCAACTACATTGAAACTGAAACTTCAGGGCCTACATTCTCCATGGGTGGGAAGTTAGAGCTACCTGGAAATCAAATAGTTTCAGATGATGAAGAAGAGAGTGATGATGAAACTCTATATAGACGCTCGGTTTCTCTTTGA 1188 0.3948 MRERVEFLQKIGLTIDDMNEYPLMLACSVRKNMVPVLTYLEKIGISRSKVGEFIKNYPQVLHASVIVDLVPVVKFLRGLDVERHDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVRPRDIGPMVTQYPYLLGMRVGSTIKPLIDYLVSLGLPKQILTRMLEKRAYILGYDLEETVKPNVECLVSFGVRREALPSVIAQYPQIIGLPLKAKLSSQQYFFSLKLKIDPEGFARAVEKMPQIVSLQQSIIMKPVDFLLGRAIPPEDVANMLVRCPQLIACRVELMKNSYYFLKTEMSRPMKELVEFPEYFTYSLESRIKPRYQRLKSKGIRFSLNWMLNCSDQRFEERLQGNYIETETSGPTFSMGGKLELPGNQIVSDDEEESDDETLYRRSVSL* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00214 395 SMART mt_12 15 46 IPR003690 GO:0003690|GO:0006355
Pte17g00214 395 SMART mt_12 123 154 IPR003690 GO:0003690|GO:0006355
Pte17g00214 395 SMART mt_12 159 190 IPR003690 GO:0003690|GO:0006355
Pte17g00214 395 SMART mt_12 51 82 IPR003690 GO:0003690|GO:0006355
Pte17g00214 395 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Pte17g00214 395 SMART mt_12 232 262 IPR003690 GO:0003690|GO:0006355
Pte17g00214 395 SMART mt_12 87 118 IPR003690 GO:0003690|GO:0006355
Pte17g00214 395 SMART mt_12 195 227 IPR003690 GO:0003690|GO:0006355
Pte17g00214 395 SMART mt_12 299 330 IPR003690 GO:0003690|GO:0006355
Pte17g00214 395 FunFam Transcription termination factor mterf4, chloroplastic 1 139 - -
Pte17g00214 395 Gene3D Transcription termination factor 3, mitochondrial 1 137 IPR038538 -
Pte17g00214 395 Gene3D Transcription termination factor 3, mitochondrial 138 355 IPR038538 -
Pte17g00214 395 MobiDBLite consensus disorder prediction 372 395 - -
Pte17g00214 395 FunFam Transcription termination factor MTERF4, chloroplastic 140 353 - -
Pte17g00214 395 Pfam mTERF 37 345 IPR003690 GO:0003690|GO:0006355
Pte17g00214 395 PANTHER CGI-12 PROTEIN-RELATED 35 168 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00214 Pte-Chr17 2735440 2737169 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pte17g00214 mTERF 2.1e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00214 K15031 - qsa:O6P43_029347 681.019