Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00206 ATGCAGCACGATAACTCAGAGCTTTACCGATTCCTCGCTGCAATGCCATACAACTTGTCAGCAACGGCAGCCACTGCCACAGCCACCAATACTATGCACAGCTTTTGTAGTTCCTCATACTACCCTCTTGATGTTTCAGAACTTACTGATGCCACACCGCAAGATCGAGCCCTTGCTGCCTTAAAGAATCACAAAGAGGCTGAGAAGAGAAGAAGAGAAAGAATTAACTCCCACCTTGACAAGCTTCGAACTCTTCTTCCATGTAACTCAAAGACAGACAAAGCTTCACTTCTTGCAAAGGTTGTCCAAAGAGTGAGAGAGCTCAAACAGCAAACTGCTGAAATCACCGGGCTCGAGACATTTCCATCTGAGACTGATGAGATCACCGTTCTCTCCACTCACGGAGACTACCCAAATGACGGTCAGCTCATCTTTAAAGCGTCTTTATGCTGTGAAGACCGTTCGGACCTTATACCTGACTTAATCGAAATCCTCAAATCCCTCCATCTCAAAACCCTTAAGGCAGAAATGGCCTCACTTGGTGGAAGGATGCGTAATGTTCTCATCGTTGCCGCAGATAAAGAACACAGTATTGAATGCCTCCATTTCTTGCAGAATGCTTTGAAATCCTTGCTAGAACGTTCAAATTCTACTGACAGGTCCAAGCGGAGAAGGGTTTTAGATCATAAAATAATTGTCTAA 702 0.4473 MQHDNSELYRFLAAMPYNLSATAATATATNTMHSFCSSSYYPLDVSELTDATPQDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVRELKQQTAEITGLETFPSETDEITVLSTHGDYPNDGQLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMASLGGRMRNVLIVAADKEHSIECLHFLQNALKSLLERSNSTDRSKRRRVLDHKIIV* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00206 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 63 117 IPR036638 GO:0046983
Pte17g00206 233 Pfam Helix-loop-helix DNA-binding domain 63 108 IPR011598 GO:0046983
Pte17g00206 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 108 IPR011598 GO:0046983
Pte17g00206 233 SMART finulus 65 114 IPR011598 GO:0046983
Pte17g00206 233 PANTHER TRANSCRIPTION FACTOR BHLH30 40 229 IPR045847 GO:0003700|GO:0006355
Pte17g00206 233 CDD bHLH_AtAIG1_like 54 130 - -
Pte17g00206 233 FunFam transcription factor bHLH30 54 117 - -
Pte17g00206 233 Gene3D - 54 117 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00206 Pte-Chr17 2641901 2644394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00206 1 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 63.158 1.21e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte17g00206 HLH 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00206 - - pvy:116124749 342.043