Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00203 ATGGGAAAAGGGAGAGCACCATGCTGCGATAAGTCTAAAGTGAAAAGGGGTCCTTGGAGTCCAGCTGAAGACTTGAAGCTCATCACTTTCATTCAGACACATGGCCATGATAACTGGAGAGCTCTCCCCAGACAAGCAGGACTTTTGAGATGTGGGAAAAGCTGTCGGTTGAGATGGATAAATTATCTGAGACCAGATTTGAAAAGAGGGAATTTCACAAAAGAGGAAGAGGAGATGATTATTAGGCTGCATGCAGAACTTGGGAACAAATGGTCCATGATTGCATCCCATTTGCCAGGGAGGACAGACAATGAGATCAAGAATGTTTGGAACACCCATTTGAAGAAGAAAGTGTCGGCTTCAAAAAAAAGTACAGAATCTGAGGGAGATGAGTCCAAGGAATCCTCTCTAACCTCGTACTCCGTATCTTCTGTTGACTCAAGTAACTCACAAAACAAAGACAGGAGCACTTCTAGTCATCAAGAACTCAAAAAACAAGCTCCCACAAAATCAGTAGAGCAAGATTCGCTGCAACAAGTTTCAAGTAAAGATGATGGTACAAATGCGGAGCTGAAGGAGTCATCAAGCTCAGTGTCTTATAACTCTGATGTCTCCAACAACACTAGCCAGTTTGATAATTACAGAGGCCTTGAACAAATAAGCCCAACCGTTACTTACGCAGTGAATAACACATTAGAAGAGGTGAACAAACCAGATATCTCAGACTTTAACAATGTCATGGAACTACCTTTGGAGTCAGACATTGATTTTTGGGCAATGTTAGATAACATAGCATCCTGTCAGTCTGATGGGGTCCAATTAGGCGACCTTACCGTATCTCATCAACCCTCATACTTTGGAGAAAGCTTTGGTCATGAAGAGGAGAATAGGAAATGGCTGCAGTACTTGGAGCATGAGTTAGGATTAGATACAGTGTCGACTAAGGATCTAAATGAAGATCAGGATCAAGCAGACAATGCAGACAAACCTATTCCACAGGATTCTCAACTCTCCTTAATGTTCTAA 1026 0.422 MGKGRAPCCDKSKVKRGPWSPAEDLKLITFIQTHGHDNWRALPRQAGLLRCGKSCRLRWINYLRPDLKRGNFTKEEEEMIIRLHAELGNKWSMIASHLPGRTDNEIKNVWNTHLKKKVSASKKSTESEGDESKESSLTSYSVSSVDSSNSQNKDRSTSSHQELKKQAPTKSVEQDSLQQVSSKDDGTNAELKESSSSVSYNSDVSNNTSQFDNYRGLEQISPTVTYAVNNTLEEVNKPDISDFNNVMELPLESDIDFWAMLDNIASCQSDGVQLGDLTVSHQPSYFGESFGHEEENRKWLQYLEHELGLDTVSTKDLNEDQDQADNADKPIPQDSQLSLMF* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00203 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 206 - -
Pte17g00203 341 Gene3D - 16 68 - -
Pte17g00203 341 MobiDBLite consensus disorder prediction 321 341 - -
Pte17g00203 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pte17g00203 341 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Pte17g00203 341 MobiDBLite consensus disorder prediction 134 156 - -
Pte17g00203 341 Gene3D - 70 141 - -
Pte17g00203 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pte17g00203 341 CDD SANT 71 114 IPR001005 -
Pte17g00203 341 SMART sant 15 65 IPR001005 -
Pte17g00203 341 SMART sant 68 116 IPR001005 -
Pte17g00203 341 MobiDBLite consensus disorder prediction 170 207 - -
Pte17g00203 341 CDD SANT 18 63 IPR001005 -
Pte17g00203 341 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pte17g00203 341 FunFam Transcription factor RAX3 9 69 - -
Pte17g00203 341 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pte17g00203 341 MobiDBLite consensus disorder prediction 116 207 - -
Pte17g00203 341 MobiDBLite consensus disorder prediction 119 133 - -
Pte17g00203 341 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pte17g00203 341 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00203 Pte-Chr17 2608011 2610111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00203 1 310 MYB Transcription Factor Family AT1G79180 42.274 3.52e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte17g00203 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00203 K09422 - tcc:18594753 325.865