Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00196 ATGCCATTCTGGTGCCTCATCTCCTCAGCATATCCAACCCACATGTGCCTTCCTTGGATTCAAGCACACACAATGATAAGGCTGCAAACATATGCTGGTCTTAGTTTGATTGCAACACTTGCCGTTGTATACCATGCCTTTAACAGCAGAGGCCAGTTTTACCCAGCAATGGTTTATTTGTCCACCTCAAAGATCTGTTTGGTGCTTCTTCTCAACATGGGTCTGGTCATAATGTGCATTTTATGGCAATTAACCAAGAGTGTGTTCCTTGGTTCGTTAAGAGAAGCCGAGGTTGAGAGACTTAATGAGCAATCATGGAGGGAGGTCATGGAAATCCTGTTTGCTATCACTATTTTCAGGCAGGATTTTTCCGTTACATTTCTTGCTATGGTCACTGCTTTATTGTTGATCAAGGCTTTGCATTGGTTAGCTCAGAAAAGGGTGGAGTATATTGAAACCACTCCTACAGTTCCCACGCTGTCTCATGTTCGGATTGTGTCTTTTATGGGGTTCCTGCTTCTTCTTGATGGTCTCTTATTGTACAGTTCGATAAAGCATTTGTTAGAGACACGGCAGGCTTCGGTTTCTATTTTCTTTGCTTTTGAGTATGTGATACTGGCGACAACAACTGTTTCCATATTCGTGAAATATGTTTTCTATGTCAGTGACATGCTTATGGAGGGACAGTGGGAGAAGAAGCCAGTTTTTACATTTTATTTGGAACTCATTCGGGATTTGCTGCACTTGTCTATGTATCTGTGCTTCTTTCTTGTGATTTTCGTAAATTACGGTGTACCTTTACACTTAATTAGAGAGCTCTACGAGACCTTTAGGAACTTCAAGATCCGTGTTGCTGACTACATACGTTATCGGAAGATAACTTCAAATATGAATGATCGATTTCCAGATGCAACTTCTGAAGAGCTTAATGCAAGTGATGCTACCTGCATCATTTGTCGTGAAGAGATGGCGACAGCCAAGAAACTGATATGTGGACATCTTTTCCATGTGCATTGTTTGCGGTCATGGTTAGAGAGGCAGCACACCTGTCCTACTTGTAGAGCTTTGGTTGTACCTCCAGAAACTGGCACAAGTGCTGCTGGAGGGCGGCATGCTTCACAAGAAGATGCTCATAATCATGGCACGGGCTCTGGAACCACTGCCGAAGGTGCCAGTAGAGGTGCTAATGTGAGTCAGCATCAGGCAAGGCTACAAGCTGCTGCTGCTGCTGCTGCAATATATGAGAAATCTTATGTATACCCATCAGCGAATTCTTTAGTATGGTCCCCAGGATATGCTGTTCATCCTCGTGTTCAAAGACCTTTGTCAGATATCCCTACTGGACAAGCAGAACAGTTTACCCCTTCTGGACCTACAGATTTCTCCTTTCCTCCAACGCGGCACTGTGTTTTCTTTCCTTCTCAGGTGCCTGGAACCAACAGTAACTGCAGCCAAAACTTGAGAGACAATTCAGGCGTATCAGAGACACAGCTTGAAGCTCAATGGCAATTTATTCAGCACCAGATTGAGGTACTGCAAAACCAGCTCCAACTTCTACCGAAGCTGAAACTTGAGAGGAGTGTCGATGAAGAAGGCTTATCATCGGATAACAACAGATATGTTCCCTCATCTTCTTCTCTCACTAGCCACAGTGGTCAAAAGGCTGCTGCTGACATTTCTAGATAA 1686 0.4389 MPFWCLISSAYPTHMCLPWIQAHTMIRLQTYAGLSLIATLAVVYHAFNSRGQFYPAMVYLSTSKICLVLLLNMGLVIMCILWQLTKSVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVPTLSHVRIVSFMGFLLLLDGLLLYSSIKHLLETRQASVSIFFAFEYVILATTTVSIFVKYVFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYLCFFLVIFVNYGVPLHLIRELYETFRNFKIRVADYIRYRKITSNMNDRFPDATSEELNASDATCIICREEMATAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPETGTSAAGGRHASQEDAHNHGTGSGTTAEGASRGANVSQHQARLQAAAAAAAIYEKSYVYPSANSLVWSPGYAVHPRVQRPLSDIPTGQAEQFTPSGPTDFSFPPTRHCVFFPSQVPGTNSNCSQNLRDNSGVSETQLEAQWQFIQHQIEVLQNQLQLLPKLKLERSVDEEGLSSDNNRYVPSSSSLTSHSGQKAAADISR* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00196 561 ProSiteProfiles Zinc finger RING-type profile. 316 354 IPR001841 -
Pte17g00196 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 360 IPR013083 -
Pte17g00196 561 MobiDBLite consensus disorder prediction 527 561 - -
Pte17g00196 561 MobiDBLite consensus disorder prediction 364 399 - -
Pte17g00196 561 MobiDBLite consensus disorder prediction 534 561 - -
Pte17g00196 561 CDD RING-H2_synoviolin 313 354 - -
Pte17g00196 561 MobiDBLite consensus disorder prediction 378 399 - -
Pte17g00196 561 PANTHER RING ZINC FINGER PROTEIN 24 536 - -
Pte17g00196 561 Pfam Ring finger domain 315 354 IPR001841 -
Pte17g00196 561 SUPERFAMILY RING/U-box 296 360 - -
Pte17g00196 561 SMART ring_2 316 353 IPR001841 -
Pte17g00196 561 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 288 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00196 Pte-Chr17 2408556 2417517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00196 25 532 C3H Transcription Factor Family AT3G16090 65.692 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00196 K10601 - qsu:112000395 755.747