Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00175 ATGAGTGCAATTGAGTTGGAGAAAATGGAAGATGTTAAACCTTTGCCTGCGTCACCTGGCAGTCCACAACCACGAGTTAAACTAGAGGATCCCACTGTATCCAGATTCACTAATTTCTGCAAGGAGGGACTATTACTGGATGAGAAAAGTTTTGGTCAAGCAGTGAAGCTGTTGGAAGAAACCAAAGCCCTTTTAGCTTCAAACATGTCTGCTATTGGAAATGGAACGCCTGAGGAAGCAGAGAGATTTTGGTTTTCATTCATTTTGTACTCAGTTAAGAAGTTGACTGAGAAGGGTGAACACATGGAGCAAGAAGAAAGTTCTCATCATGCACTTAACTTATGCCAAATACTAAGAGTAGCAAAGCTCAACATTGTGGAATTCTTTAAAGAACTTCCTCATTTTGTTGTTAAAGCTGGTTCTATTTTAACAAGTCTATATGGTGCAGATTGGGAAAACAAGCTTGAGGCAAAGGAGTTGCAAGCCAATTTTGTGCACTTAAGCCATCTTAGCAAGTATTACAAACGTGTGTATGGGGAGTTCTTCCTCACAAGTGATGCAAATGATGAAAAGCAGTCACTTGCTGATATGGCCAATAGTTTTGGATCCAAGTACCATCGATTTGGATGGTTGCTCTTCTTGGCACTGCGTGTGCATGCATTCAGCCGTTTTAAAGATCTAGTGACTTGTACAAATGGGTTAGTTTCAGTATTGGCTATCTTGATTATTCATGTCCCTGTTCGGTTTAGGAAAGTTAGTATCCACGACTCAACACGCTTTGTTAAGAAAAGCAACAAAGGAGTGGACATACTTGCATCCCTTTGCAATATCTATGACACTTCAGAAGAAGAGCTGAAGAAAACTATGGACAAGACTAACGATTTAATCTCAGATATTTTGAAGAAAAAACCTTGTTTGGCATCTGACTTTGAGAATGAAAACCTAGAAAATATTGACAAAGATAGCTTGATCTATTTTGAAGATCTAATGGATGAATCATCACTGTCTGCTTGCATAGATATTTTAGAAAGGGATTATGATGAGGCGATCCGTAATAAGGGTGAATTAGATGAAAGGGTTTTCATTAACGAGGAGGACAGCTTACTCGGTTCTGGAAGCTTGTCTGGAGGCTCTCTGAGTATAACTGGCTTTAAGAGAAAATTTGATTCATTAGCCTCACCAACAAAGTCAGTCACATGTCAACTGTCACCGTGCCGTTCTCCTGCATCTCATTCAAATGGCATCCCTAATATTAGAACTGCAACGATGGTAGCTACACCTGTAAGCACAGCTATGACTACCGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTCCATCAAAACCCTCACCAGAACTGGAAAGGTTCCTGGTAGCTTGTAACAAAGATGTTACCAGTGATGTGGTGCATCGGGCACAGATAATTTTACAGGCAATTTTTCCTAGCAGTCCTCTGGGAGAGCGTTGTGTAACTGGAAGTCTGCCAAATGCCAGTGTCATGGACAACATTTGGGCAGAACAGCGAAGGTCAGAAGCGTTGAAGTTATACTACAGGGTTTTGGAAGCAATGTGCAGGGCTGAATCTCAATTACTGCATGCTACCAATTTGACTTCACTATTAACCAATGAGAGGTTTCATAGATGTATGCTTGCCTGTTCGGCAGAGTTGGTTCTTGCAACGCACAAGACTGTCACCATGCTGTTTCCTGCTGTGTTAGAGCGGACTGGCATCACAGCGTTTGATCTTAGCAAGGTGATAGAAAGTTTTATTAGACATGAGGAGTCTCTCCCAAGAGAACTAAGACGACATCTGAATTCCTTGGAAGAACGACTTTTGGAGAGTATGGTATGGGAAAAGGGTTCATCGATGTATAATTCTTTGATAGTTGCTAGATCTGCCCTCTCAGCAGAGATAAATCGTCTAGGATTGCTGGGAGAACCAATGCCATCTTTGGATGCAATTGCCATGCAAATTAACTTCCCTTGTGCTGGGCTTCCCTCAGTGCCTTCGATGCAGAAGGTTGACAGTTTGCCTGGTCAGAATGGGGATCTCAGATCTCCGAAGCGCTTGTGCACTGAACTCAGAAATGTGTTAGTAGAACGCAATTCTTTTACCTCACCAGTGAAAGACCGTCTTCTGACTTTTAGCAACATTAAGTCAAAGGCGCAGCTTCCTCCGTTGCAGTCAGCATTTGCCAGTCCAACAAGACCCAATCCTGGAGGTGGTGGAGAAACATGTGCTGAGACCGGAATTGATATATTTTTCAGCAAGATAGTTAAATTGGGAGCTGTCAGAATTAACGGAATGGTTGAAAGACTACAACTCTCTCAAGAGATACGGGAGAATGTGTACCGTCTTTTCCAACAAATACTGAGCCAGAGGACATCTCTCTTCTTCAACCGTCATATTGACCAAATAATTCTATGTTGCTTCTATGGTGTTTCGAAGATTTCTCAATTGACCTTGACTTTTCGGGAGATCATTAACAACTACAGGAAGCAATCGCATTGCAAAACACAGGTTTTCCGCAGTGTATATGTGGATCGGTCATCATCACGTCACAATGGAAGAAATGGACAGGATCATGTTGACATCATTACTTTCTACAACGAAATATTTGTTCCTTCAGTAAAATATCTGCTGGTTGAGCTTGGCCAGAGTGGAACACCGACAAAATGTAATATAAAACCTGAAGTCAATAATAACAAAGAGGTTCAATGTCCTGGATCACCGAAAGTGACCTTTCCTAGCCTTCCCGATATGTCACCAAAGAAAGTATCTGCAACACACAATGTATATGTGTCACCATTACGGTCATCAAAGATGGATGCTTTAATATCACATACTTCAAAGAGCTACTACGCTTGCGTTGGAGAGAGCACACATGCATATCAGAGTCCTTCGAAGGATTTAACAGCCATTAACAACCGTTTGAACAGTACGCGAAAGGTCAGAGGTACACTCAACTTTGATGATGCTGACGCCGGCTTGGTTAGTGATTCTATGGTGGCCAACAGCCTCTACCTCCAAAATGGAAATTGTGCATCTTCGTCATTTGCACAAGTGAAATCTGAGCAACCTGACCCTTAA 3090 0.4194 MSAIELEKMEDVKPLPASPGSPQPRVKLEDPTVSRFTNFCKEGLLLDEKSFGQAVKLLEETKALLASNMSAIGNGTPEEAERFWFSFILYSVKKLTEKGEHMEQEESSHHALNLCQILRVAKLNIVEFFKELPHFVVKAGSILTSLYGADWENKLEAKELQANFVHLSHLSKYYKRVYGEFFLTSDANDEKQSLADMANSFGSKYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSVLAILIIHVPVRFRKVSIHDSTRFVKKSNKGVDILASLCNIYDTSEEELKKTMDKTNDLISDILKKKPCLASDFENENLENIDKDSLIYFEDLMDESSLSACIDILERDYDEAIRNKGELDERVFINEEDSLLGSGSLSGGSLSITGFKRKFDSLASPTKSVTCQLSPCRSPASHSNGIPNIRTATMVATPVSTAMTTAKWLRTVISPLPSKPSPELERFLVACNKDVTSDVVHRAQIILQAIFPSSPLGERCVTGSLPNASVMDNIWAEQRRSEALKLYYRVLEAMCRAESQLLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVARSALSAEINRLGLLGEPMPSLDAIAMQINFPCAGLPSVPSMQKVDSLPGQNGDLRSPKRLCTELRNVLVERNSFTSPVKDRLLTFSNIKSKAQLPPLQSAFASPTRPNPGGGGETCAETGIDIFFSKIVKLGAVRINGMVERLQLSQEIRENVYRLFQQILSQRTSLFFNRHIDQIILCCFYGVSKISQLTLTFREIINNYRKQSHCKTQVFRSVYVDRSSSRHNGRNGQDHVDIITFYNEIFVPSVKYLLVELGQSGTPTKCNIKPEVNNNKEVQCPGSPKVTFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHTSKSYYACVGESTHAYQSPSKDLTAINNRLNSTRKVRGTLNFDDADAGLVSDSMVANSLYLQNGNCASSSFAQVKSEQPDP* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00175 1029 Gene3D - 205 363 - -
Pte17g00175 1029 FunFam Retinoblastoma-related protein 1 205 363 - -
Pte17g00175 1029 FunFam Retinoblastoma-related protein 1 701 911 - -
Pte17g00175 1029 SUPERFAMILY Cyclin-like 749 894 IPR036915 -
Pte17g00175 1029 MobiDBLite consensus disorder prediction 8 28 - -
Pte17g00175 1029 Gene3D - 709 900 - -
Pte17g00175 1029 Coils Coil 339 359 - -
Pte17g00175 1029 SUPERFAMILY Cyclin-like 434 629 IPR036915 -
Pte17g00175 1029 Pfam Retinoblastoma-associated protein B domain 751 878 IPR002719 GO:0005634|GO:0051726
Pte17g00175 1029 Pfam Domain of unknown function (DUF3452) 109 244 IPR024599 -
Pte17g00175 1029 Gene3D - 429 617 - -
Pte17g00175 1029 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 32 1027 IPR028309 GO:0006357|GO:0051726
Pte17g00175 1029 Pfam Retinoblastoma-associated protein A domain 426 627 IPR002720 GO:0005634|GO:0051726
Pte17g00175 1029 SMART RB_A_2 426 627 IPR002720 GO:0005634|GO:0051726
Pte17g00175 1029 FunFam Retinoblastoma-related protein 1 429 617 - -
Pte17g00175 1029 SMART DUF3452_2 95 244 IPR024599 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00175 Pte-Chr17 2240722 2249374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00175 9 1006 Core Cell Cycle Gene Families AT3G12280 69.392 0.0 1368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Pte17g00175 RB_A 3.9e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00175 K04681 - qsa:O6P43_001515 1587.78