Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00160 ATGTCTCCAAAGGAACAGATGCTGAACCCTGTATTCAAAACCATAGTGACAACTTCTGTGGAGGAAGGTTCATCGTCTCTTCATTCATCACCATCAGCAGATATCTTTTCTTGGATGCAACTGTCTCCTGGACTAGGATCACCATACATAAGGCTCAGAGAGCTAAAATCAGAAGACAGAGGCCTGTGGTTGTTCCGTCTTCTTGAAGCCTGCACAAACCACATAGCATCTGGCAGAATCAAGAATGCAGACGTTGAGCTTAGGTGCATATCTCAACTGGCTTCACCAGATGGCGATTCGGTGCAGCGCATCGCTACTTACTTCAGTGAAGCACTTAGTTACAGAGTGATCAAACATTTGCCTGGTGTATTCAGCATTCTTGATTCCACAAATAAACTATCAGCTGCGGAAGAACATCTTGTGCAGAAAATTTACTTTGATCTGTGTCCATTTCTAAAGCTTGCATATGTTCTCACAAACCAGGCTATTATGGAAGCAATGGAAGGCGAGAAGGTGGTTCATATTGTTGATCTCAATTGCTTTGAGCCAGCTCAGTGGATTGAGCTTTTACATAGATTAAGAGAACGCGCAGGAGGGCCTCCTCATCTTAGACTTACAGGCATTCATAAGCAGAAAGAGGTGTTAGACCACATGGCAGGTCGGTTATCGAAAGAAGCTGAATTGTTAGATATACCTTTTCAATTCAATCCTATAGTAGGAAACCTGGACAGCATTGATATTGATTGTTTGGGTGTGAAGACAGGAGAAGCTCTTGCAGTGAGCTCTGTGCTTGAACTGCATACTCTCCTGGAAATGGACGATGAAATGCATACCCCACAAGGACAAAGCAATCTGCAGAAGGCAGTACATGTTCACAGAAGAACATTAGCAGACTGGTTGGAGAAAGATATGATGAATGCATATTTGCCAAGTCCTGATTCAGCCCTATCCCCTCTTTCGGTCAGTGCTTCTCCGAAAATGGGGAGCTTTTTAACTGGACTGAGAGCCCTCTCCCCAAAACGAATGGTGATCACAGAACAAGAGTCGAATGTCAATGTCTCTAACCTAATGGAAAGGGTAATGGAAGCACTGCACTTTTATGGTGCCTTGTTTGATTGCTTGGAGTCTACGGTTTCCAGGACATCAGCTGAGAGACATAAGGTTGAGAAGATGCTGTTTGCAAAGGAAATTAACAATATTATCACATGTGAGGGAGTGGAGAGGAAGGAAAGGCATGAGATGCTGGAGAAATGGAATTTGAGGCTTGAGCTGGCTGGATTTGGTAGAGTGCCTTTTAGCTACCATGGCATGTGGTTAGCAAAGAGACTTCTGGAGAACTACGGTAATGGATATGTAATCAAAGAGAAGAGTGGCGCTTTGGTGATATGTTGGAACGACAGACCACTCTATTCTGTTTCAGCATGGGGTGTTAGAAGCTAG 1440 0.4389 MSPKEQMLNPVFKTIVTTSVEEGSSSLHSSPSADIFSWMQLSPGLGSPYIRLRELKSEDRGLWLFRLLEACTNHIASGRIKNADVELRCISQLASPDGDSVQRIATYFSEALSYRVIKHLPGVFSILDSTNKLSAAEEHLVQKIYFDLCPFLKLAYVLTNQAIMEAMEGEKVVHIVDLNCFEPAQWIELLHRLRERAGGPPHLRLTGIHKQKEVLDHMAGRLSKEAELLDIPFQFNPIVGNLDSIDIDCLGVKTGEALAVSSVLELHTLLEMDDEMHTPQGQSNLQKAVHVHRRTLADWLEKDMMNAYLPSPDSALSPLSVSASPKMGSFLTGLRALSPKRMVITEQESNVNVSNLMERVMEALHFYGALFDCLESTVSRTSAERHKVEKMLFAKEINNIITCEGVERKERHEMLEKWNLRLELAGFGRVPFSYHGMWLAKRLLENYGNGYVIKEKSGALVICWNDRPLYSVSAWGVRS* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00160 479 Pfam GRAS domain family 66 475 IPR005202 -
Pte17g00160 479 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 63 472 IPR005202 -
Pte17g00160 479 ProSiteProfiles GRAS family profile. 55 476 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00160 Pte-Chr17 2117294 2119637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00160 21 480 GRAS Transcription Factor Family AT1G50420 53.445 2.71e-168 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte17g00160 GRAS 3e-118 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00160 - - qsa:O6P43_001433 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00160 17 2117294 2119637 Pte17g00160 17 2117294 2119637 RCT