Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte17g00139 | ATGCGAGCCATACTAATAGGCACCATTGCCTTTCACAATCTCCCCACAGCTAGCACTGCACATTTCTTTGGGGGATCAATTCCCTCTCAAGCTCATAAAGCATCAATGAGGCCAGCACCACTGGCTTCCTCCCCAGTTGACCATGTCATACATATGACTCCTGAGCTATCATCTATAAAAAAATCTGCAGCAAGTAACTACACATACAATCCAAGTGCCATTCGGTGTTTCTTGAGAGGGAGCCATTCCTCCCAGACGACACAGCAGCAGCAACGGCAGAAGGGAAACACAGAAGATGAGAAAGATGATGTGATGACAGTTGCAGCTACACCAATGGTGTTTTCAATTGGGATTAAGCTGGCAGGGACGGAAGCTGAGTGTGCCATTTGCTTATCTGAATTTGTCGTGGGTGAAGAAATTCAGGTACTGAGAAAGTGCAATCATGGTTTTCATTTGCAATGCATTGAGAAGTGGTTGCATTCACAGTCATCATGTCCCACTTGTCGGCGTAGTTGTTTGTAA | 522 | 0.4559 | MRAILIGTIAFHNLPTASTAHFFGGSIPSQAHKASMRPAPLASSPVDHVIHMTPELSSIKKSAASNYTYNPSAIRCFLRGSHSSQTTQQQQRQKGNTEDEKDDVMTVAATPMVFSIGIKLAGTEAECAICLSEFVVGEEIQVLRKCNHGFHLQCIEKWLHSQSSCPTCRRSCL* | 174 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte17g00139 | 173 | CDD | RING-H2_EL5-like | 126 | 169 | - | - | |
Pte17g00139 | 173 | MobiDBLite | consensus disorder prediction | 81 | 102 | - | - | |
Pte17g00139 | 173 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 172 | IPR013083 | - | |
Pte17g00139 | 173 | SUPERFAMILY | RING/U-box | 126 | 172 | - | - | |
Pte17g00139 | 173 | ProSiteProfiles | Zinc finger RING-type profile. | 127 | 169 | IPR001841 | - | |
Pte17g00139 | 173 | PANTHER | RING-H2 FINGER PROTEIN ATL78 | 72 | 172 | IPR044602 | GO:0016567|GO:0016740 | |
Pte17g00139 | 173 | SMART | ring_2 | 127 | 168 | IPR001841 | - | |
Pte17g00139 | 173 | Pfam | Ring finger domain | 126 | 169 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte17g00139 | Pte-Chr17 | 1935382 | 1936117 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte17g00139 | 72 | 171 | C3H Transcription Factor Family | AT5G47610 | 53.465 | 7.42e-29 | 103 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte17g00139 | K19040 | - | jre:108982451 | 122.864 |