Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00139 ATGCGAGCCATACTAATAGGCACCATTGCCTTTCACAATCTCCCCACAGCTAGCACTGCACATTTCTTTGGGGGATCAATTCCCTCTCAAGCTCATAAAGCATCAATGAGGCCAGCACCACTGGCTTCCTCCCCAGTTGACCATGTCATACATATGACTCCTGAGCTATCATCTATAAAAAAATCTGCAGCAAGTAACTACACATACAATCCAAGTGCCATTCGGTGTTTCTTGAGAGGGAGCCATTCCTCCCAGACGACACAGCAGCAGCAACGGCAGAAGGGAAACACAGAAGATGAGAAAGATGATGTGATGACAGTTGCAGCTACACCAATGGTGTTTTCAATTGGGATTAAGCTGGCAGGGACGGAAGCTGAGTGTGCCATTTGCTTATCTGAATTTGTCGTGGGTGAAGAAATTCAGGTACTGAGAAAGTGCAATCATGGTTTTCATTTGCAATGCATTGAGAAGTGGTTGCATTCACAGTCATCATGTCCCACTTGTCGGCGTAGTTGTTTGTAA 522 0.4559 MRAILIGTIAFHNLPTASTAHFFGGSIPSQAHKASMRPAPLASSPVDHVIHMTPELSSIKKSAASNYTYNPSAIRCFLRGSHSSQTTQQQQRQKGNTEDEKDDVMTVAATPMVFSIGIKLAGTEAECAICLSEFVVGEEIQVLRKCNHGFHLQCIEKWLHSQSSCPTCRRSCL* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00139 173 CDD RING-H2_EL5-like 126 169 - -
Pte17g00139 173 MobiDBLite consensus disorder prediction 81 102 - -
Pte17g00139 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 172 IPR013083 -
Pte17g00139 173 SUPERFAMILY RING/U-box 126 172 - -
Pte17g00139 173 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Pte17g00139 173 PANTHER RING-H2 FINGER PROTEIN ATL78 72 172 IPR044602 GO:0016567|GO:0016740
Pte17g00139 173 SMART ring_2 127 168 IPR001841 -
Pte17g00139 173 Pfam Ring finger domain 126 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00139 Pte-Chr17 1935382 1936117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00139 72 171 C3H Transcription Factor Family AT5G47610 53.465 7.42e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00139 K19040 - jre:108982451 122.864