Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00116 ATGGGGAAAGAGAAAGTGAACAATAACAAGAACAAGCTAAGGAAAGGTCTGTGGTCACCAGAAGAAGATGAGAAGCTGATAAGATACATGCTAACCAATGGTCAAGGATGTTGGAGTGACATTGCTAGAAATGCTGGCTTGCAAAGATGTGGCAAAAGCTGTCGTCTTCGTTGGATTAATTACTTGAGACCTGACCTTAAGCGTGGTGCATTTTCACCACAAGAAGAAGGCCTCATTGTTCATTTGCATTCAATACTAGGCAACAGGTGGTCTCAGATTGCAGCACGTCTTCCCGGAAGAACTGACAATGAAATTAAGAATTTCTGGAACTCCACATTGAAGAAAAGGTTGAAGAACGATACTTCCAAATCCTCTCCCAATAAAAGTACTGAGTCTTCTACTGAGCCTACTGATGTATTCAGCGGAATCATGCCTACCAATGAAATTGACCTAATGACCATTTGCATGGCCTCAACATCGCCATCTTCGTCCATGCAGCCCATGCAAACCATGGCATTTAGCAATGAATTAGATCCATTCTCAATGCTTAATAACTTGTATGACATGAGCAGTGCAGTTGGTATAGCTGATTTGCCTCCATGCATAACGCAAGTTGGTGCTGGACATGGTGTCGCCGTCTATGATGATTATCGGATAATAGAGCCTACCAGCTGCAAGGTTGGGTTAGATAGGGACCTACTCTCTCTTCCTCCTCTTGAGAGTAGTACAACCATGGAAGATAATTATGCTCAGGTTGATGTGAAAAGCAATTACAATCATCTCAACAGTCTTAATAATGGTTGCTTCAATGGCACTGATCGAAGCTGCAACATAGAGGAAATGCTTGGGTTTGGAAATCATGGTCAGGATGACCAGTTAAGAACGACAGAATGGAATTTGGAGGGTCTAATGCAGGACATTTCCTCTTTCCCTTTCATTGATCACAATGTTTTATAA 957 0.4211 MGKEKVNNNKNKLRKGLWSPEEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEGLIVHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKNDTSKSSPNKSTESSTEPTDVFSGIMPTNEIDLMTICMASTSPSSSMQPMQTMAFSNELDPFSMLNNLYDMSSAVGIADLPPCITQVGAGHGVAVYDDYRIIEPTSCKVGLDRDLLSLPPLESSTTMEDNYAQVDVKSNYNHLNSLNNGCFNGTDRSCNIEEMLGFGNHGQDDQLRTTEWNLEGLMQDISSFPFIDHNVL* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00116 318 MobiDBLite consensus disorder prediction 123 140 - -
Pte17g00116 318 MobiDBLite consensus disorder prediction 117 140 - -
Pte17g00116 318 FunFam MYB transcription factor 12 68 - -
Pte17g00116 318 CDD SANT 18 62 IPR001005 -
Pte17g00116 318 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Pte17g00116 318 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pte17g00116 318 Pfam Myb-like DNA-binding domain 18 76 - -
Pte17g00116 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Pte17g00116 318 PANTHER MYB DOMAIN PROTEIN 55 1 240 - -
Pte17g00116 318 Gene3D - 70 139 - -
Pte17g00116 318 SMART sant 14 64 IPR001005 -
Pte17g00116 318 SMART sant 67 115 IPR001005 -
Pte17g00116 318 FunFam Transcription factor MYB46 69 139 - -
Pte17g00116 318 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Pte17g00116 318 CDD SANT 70 113 IPR001005 -
Pte17g00116 318 Gene3D - 12 68 - -
Pte17g00116 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00116 Pte-Chr17 1739243 1742087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00116 7 317 MYB Transcription Factor Family AT3G08500 46.154 1.25e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte17g00116 Myb_DNA-bind_6 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00116 K09422 - qsu:112038777 395.586