Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00111 ATGTCTAAGAGGACACTTTGCAAGTTCTATGCACATGGAGCATGTCTCAAGGGGGAGCATTGTGAATTTTCTCATGACTGGAAGGATCCGCCAAATAATATTTGCACATTCTATCAGAAAGGCATATGTGCATACGGCAGTCGCTGCAGATATGATCACGTCAAAGCTTCTCAGACACAGTCAACTGCTTCTTCTTCTTCAACTAATAATTTCCAGTCTGGAGTTATGAATTTTGCTCTTGATCATGCTACTAGAGGAACAAATGGATTATCCTTGGGTGCAAATGTAATTTCTTCATGTGGACCATTAGTGACACCATCTAGACCTGCATGGAAGCAAGACTTTGAGAATTGTGACTTTCTGGAGGACGGTTATATTATTGAATCCAAGAATGTACCACCAGCTGAGCGTCCCATTTGTTCATTTGCTGCTGCTGGAAACTGTCCCCGAGGAGAGATGTGTCCTCATATTCATGGAGATCCCTGTCCAACATGTGGAAAACACTGTTTGCATCCTTTCCGACCTGAGGAAAGAGAGGAACATATAAAGACATGTGAGACAAAGCAAAAACACCTTGAGGCACTGAAACGCAGTCAAGATATAGAATGCAGTGTTTGCCTTGAACGTGTCTTGTCAAAGGCCACAGCAGCTGAACGAAAATTTGGGCTTTTGTCTGAATGTGATCATCCATTCTGCATATCATGCATAAGGAATTGGCGTAGTAGCTCTGCAACTTCTGGGATGGATGTGAACAATACAGTGAGGGCCTGCCCAATTTGTCGTAAATTATCATACTTTGTCATCCCTAGTGTAATTTGGTACACCACAAAAGAAGAGAAGCAAGAAATTGTTGACAGCTACAAGGCAAGGCTGAAGTCAATTGATTGCAAGCATTTTGACTTTGGAAATTGTAGCTGCCCATTTGGCACTAGTTGCTTCTATAAGCATGCTTATCGTGATGGTCGTCTGGAAGAGGTTGTTTTACGGCATCTTGGAGCTGAGGATGGGAACACTGTTATAGCTAAAGAAACAAGGTTGTCAGATTTCTTGAATAATCTGCATTTAAGTTGA 1071 0.4202 MSKRTLCKFYAHGACLKGEHCEFSHDWKDPPNNICTFYQKGICAYGSRCRYDHVKASQTQSTASSSSTNNFQSGVMNFALDHATRGTNGLSLGANVISSCGPLVTPSRPAWKQDFENCDFLEDGYIIESKNVPPAERPICSFAAAGNCPRGEMCPHIHGDPCPTCGKHCLHPFRPEEREEHIKTCETKQKHLEALKRSQDIECSVCLERVLSKATAAERKFGLLSECDHPFCISCIRNWRSSSATSGMDVNNTVRACPICRKLSYFVIPSVIWYTTKEEKQEIVDSYKARLKSIDCKHFDFGNCSCPFGTSCFYKHAYRDGRLEEVVLRHLGAEDGNTVIAKETRLSDFLNNLHLS* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00111 356 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Pte17g00111 356 ProSiteProfiles Zinc finger C3H1-type profile. 290 319 IPR000571 GO:0046872
Pte17g00111 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 273 IPR013083 -
Pte17g00111 356 Gene3D - 32 83 - -
Pte17g00111 356 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Pte17g00111 356 SMART c3hfinal6 290 318 IPR000571 GO:0046872
Pte17g00111 356 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Pte17g00111 356 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Pte17g00111 356 Gene3D - 1 31 - -
Pte17g00111 356 ProSiteProfiles Zinc finger C3H1-type profile. 134 161 IPR000571 GO:0046872
Pte17g00111 356 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Pte17g00111 356 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Pte17g00111 356 Pfam CCCH-type zinc finger 6 26 IPR041367 -
Pte17g00111 356 CDD RING-HC_MKRN 201 261 - -
Pte17g00111 356 SMART ring_2 203 260 IPR001841 -
Pte17g00111 356 ProSitePatterns Zinc finger RING-type signature. 227 236 IPR017907 -
Pte17g00111 356 ProSiteProfiles Zinc finger RING-type profile. 203 261 IPR001841 -
Pte17g00111 356 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Pte17g00111 356 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Pte17g00111 356 PANTHER MAKORIN-RELATED 1 337 IPR045072 GO:0000209|GO:0061630
Pte17g00111 356 Pfam Zinc finger, C3HC4 type (RING finger) 203 260 IPR018957 GO:0046872
Pte17g00111 356 SUPERFAMILY RING/U-box 191 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00111 Pte-Chr17 1703415 1707824 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte17g00111 zf-C3HC4 8.9e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00111 K15687 - qsa:O6P43_001347 585.104