Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00109 ATGGTAACTTTTATCAGGACAGATTGGCTTTGGACTGTGCTGCACTTTGTCATGGTTAGCATGCCAAAGTCATTTTTTCGAGGAAGTTTCTTGATTATGGAGCATAAAGAAACTGGATTACAGGCAGCTCCTGAAGCCCCTAGACTTTGTGTCAATAATTGTGGGTTTTTTGGGAGCCCAGCAACCATGAATTTGTGTTCCAAGTGTCACAAAGACATGTCAGTCGAGCAACAACAGGCTGAACTAGCTGCATCTTCCTTTGGAAGCATTGTGAATGGCAATCCCAGTGACTGTGGTAAGGAGCCCGTAGCATGTCCTGATGTACAAGCTGGTACAGGAGGCTCTGTTATGATCTCAAATCAGGTGTCATTTACTTCTGCATTAGACAGAAAATGTGAACAAACGATGGAAGAGAGTCCAAAAACAAATGGGTGTAACACTTGCCATAAACGCGTAGGTCTTGCTGGGTTGAATTGCAAATGTGGAAATCTTTCCTGTTAA 501 0.4311 MVTFIRTDWLWTVLHFVMVSMPKSFFRGSFLIMEHKETGLQAAPEAPRLCVNNCGFFGSPATMNLCSKCHKDMSVEQQQAELAASSFGSIVNGNPSDCGKEPVACPDVQAGTGGSVMISNQVSFTSALDRKCEQTMEESPKTNGCNTCHKRVGLAGLNCKCGNLSC* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00109 166 PANTHER AN1-TYPE ZINC FINGER PROTEIN 45 166 - -
Pte17g00109 166 SMART A20_3 47 71 IPR002653 GO:0003677|GO:0008270
Pte17g00109 166 SMART A20_3 129 150 IPR002653 GO:0003677|GO:0008270
Pte17g00109 166 Gene3D - 33 92 - -
Pte17g00109 166 ProSiteProfiles Zinc finger A20-type profile. 44 78 IPR002653 GO:0003677|GO:0008270
Pte17g00109 166 SUPERFAMILY AN1-like Zinc finger 135 166 IPR035896 -
Pte17g00109 166 Pfam A20-like zinc finger 48 71 IPR002653 GO:0003677|GO:0008270
Pte17g00109 166 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 49 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00109 Pte-Chr17 1688074 1690687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00109 44 166 C2H2 Transcription Factor Family AT3G52800 36.000 4.15e-13 62.0