Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00090 ATGATAAAAGGTAAAAATTGGATCTCTTTCCAAACAGACATGACAATCAAACTTGAGAAACCACTTCTCATCAGTAGCTTCACTGCAAGCAATGTAATTATCCCGAGGCTTCGTATTCATCACTGCAAGGCTCAACCACCAAGTTCAGTGATGGGTCCTGATGGACAAATGGTAAGTCTTGGTCCAATGGATGGGGATGCAATCAAGTTGGTGACTGCATCCAAGGTCTGGATAGACCATAACACTCTGTATGAGTGCGATGAAGGGGAAGAAAGACAGAGAGTTGCAGATGAGATGTAG 300 0.4333 MIKGKNWISFQTDMTIKLEKPLLISSFTASNVIIPRLRIHHCKAQPPSSVMGPDGQMVSLGPMDGDAIKLVTASKVWIDHNTLYECDEGEERQRVADEM* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00090 99 Gene3D - 3 99 IPR012334 -
Pte17g00090 99 PANTHER PECTATE LYASE 18-RELATED 29 89 IPR045032 GO:0030570
Pte17g00090 99 SUPERFAMILY Pectin lyase-like 3 87 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00090 Pte-Chr17 1321181 1321480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00090 1 89 Polysaccharide Lyase AT5G09280 56.364 4.09e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00090 K01728 - fve:101293102 136.732