Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00084 ATGGAGCTTGGTTTAAGTTTAGGTGAAACTTCAAAAGCTTTTGGTGGGATCATGGAAAATCCTACTCATGAATCATTCAACAAGACAGGATTGTCCTTATCAATTGGTTCAGTTGGTGCAGCCGTTAAACAAGCTGAAGAAGACAATCCCAGAAAAGTAGTTAACCACAGTCATGAAGGTGAAAATATGGACGACCGTGGTGAGAGTCTGTCTCCAAAACCTAATCAGTTGCCTCTTCAGCTTGACCTTCTTCCTCACACACCAGTAGTCCTCCCTCGCACTAGTAACCTACCCCTTTCCTTCACTTGGCCTCCTTCAACTGAAAACGGTGATCAAGAAGAAGGGGAGGAAGGGCCTGCAGTGTCATCCTCTCCAAACAACAGCGCTGCCTCTTCGTTTCAGATGGATCTGTGTATATATGGCAAAGGGCTGAACCAATACGGCAAGAGAGAATCAGATGGTGAGGCATGTGATCAGAGAGCTTCTTCTAGAGCTAGTGACGAAGATGACAACAGTGGTACCAGGAAGAAGCTCAGGCTCTCCAAAGAACAGTCTGCTTTTCTTGAAGAAAATTTTAAAGAGCATAGTACCCTCAACCCTAAACAGAAGCTTGCTCTTGCAAAACAACTTGGCCTTCGTCCGCGGCAAGTAGAAGTTTGGTTTCAGAACAGGAGAGCAAGGACGAAGTTGAAGCAGACAGAGGTGGATTGTGAATACTTGAAGAAGTGTTGTGAGACATTGACAGAAGAGAACAGAAGGCTACACAAAGAGCTTCAAGAGTTAAGAGCTTTAAAGACTTCACACCCATTCTATATGCAATTACCAGCTACAACTCTCACCATGTGTCCCTCTTGTGAGAGGGTAGCCACTAATTCAACTTCTGCAGCCTCCTCAAACACTCCTCCATCTAACGCCAATACCAATGGGGCCAGTAGTACTGCTGCCACTAACAAAACTAGTGACCCCATCTTCAACACCAACATTGGGTTCCCTACCAGTAGACCCAAGTTCTATCCATTTGCTCACACCTAG 1032 0.4535 MELGLSLGETSKAFGGIMENPTHESFNKTGLSLSIGSVGAAVKQAEEDNPRKVVNHSHEGENMDDRGESLSPKPNQLPLQLDLLPHTPVVLPRTSNLPLSFTWPPSTENGDQEEGEEGPAVSSSPNNSAASSFQMDLCIYGKGLNQYGKRESDGEACDQRASSRASDEDDNSGTRKKLRLSKEQSAFLEENFKEHSTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENRRLHKELQELRALKTSHPFYMQLPATTLTMCPSCERVATNSTSAASSNTPPSNANTNGASSTAATNKTSDPIFNTNIGFPTSRPKFYPFAHT* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00084 343 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 29 307 - -
Pte17g00084 343 MobiDBLite consensus disorder prediction 149 177 - -
Pte17g00084 343 ProSiteProfiles 'Homeobox' domain profile. 171 231 IPR001356 GO:0003677
Pte17g00084 343 ProSitePatterns 'Homeobox' domain signature. 206 229 IPR017970 GO:0000981|GO:0006355
Pte17g00084 343 SMART HOX_1 173 235 IPR001356 GO:0003677
Pte17g00084 343 Gene3D - 179 229 - -
Pte17g00084 343 MobiDBLite consensus disorder prediction 45 68 - -
Pte17g00084 343 SMART halz 231 274 IPR003106 GO:0006355|GO:0043565
Pte17g00084 343 Pfam Homeodomain 175 229 IPR001356 GO:0003677
Pte17g00084 343 SUPERFAMILY Homeodomain-like 165 232 IPR009057 -
Pte17g00084 343 Coils Coil 244 267 - -
Pte17g00084 343 Pfam Homeobox associated leucine zipper 231 265 IPR003106 GO:0006355|GO:0043565
Pte17g00084 343 MobiDBLite consensus disorder prediction 41 76 - -
Pte17g00084 343 PRINTS Lambda-repressor HTH signature 202 211 IPR000047 GO:0003677
Pte17g00084 343 PRINTS Lambda-repressor HTH signature 211 227 IPR000047 GO:0003677
Pte17g00084 343 MobiDBLite consensus disorder prediction 95 109 - -
Pte17g00084 343 MobiDBLite consensus disorder prediction 292 321 - -
Pte17g00084 343 CDD bZIP 224 263 - -
Pte17g00084 343 CDD homeodomain 175 232 IPR001356 GO:0003677
Pte17g00084 343 MobiDBLite consensus disorder prediction 95 128 - -
Pte17g00084 343 FunFam Homeobox-leucine zipper protein 18 161 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00084 Pte-Chr17 1208564 1210408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00084 161 340 Homeobox Transcription Factor Family AT4G37790 60.326 1.34e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte17g00084 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00084 K09338 - qsa:O6P43_029477 347.051