Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00083 ATGGAGATTGATTTGAACCAAGAGCCTTTTGATCAAGCGCGTAGATCGGTTATGATTTTTGATTCCATTTTAAATGAAATAGAATCAACGCATGGGCGTATAGAAGAATGTATCAGGCACCTGGAAGCAGTGACAGCTAGGGCTACGCAGCGCCAAAGGTGGAGGCATGGTCACACTCCTCTTCAAGTAAGTAATCTCACTGCGTGGCTTGAAGCTGCTAATAATCAAGGTGAATACATTGCTGACCTTGAAGTTGCTGATTTTATCTCTGAAGAAGGAACGACTAGGTCTGAAAAATCTGACAAAAGGAACAATACTTTTCTAATAGATAAAGCATTGGAGATAGATACTGATAAGACAGGAAGCAATGCTAGAGAGGTTTTCAATTGTAATATTTGCCTTGACATGGCTAAAGACCCGATATTGACTTGTTGTGGTCATTTGTTTTGTTGGGCATGCTTCTATCAGTTGTCATATGCTTATTCAAATGCAAAGGAATGTTCGGTTTGTCGAGGAGACGTCACTGATTCAAGCATCACTCCAATTTATGGCAATGGGAATGTCACTGTTAGCCCTAGTTGCAGACCAAAAGACAAAGCTAAACTATTACTCCTCGGCCTCATGCACAGAGAATTGAGAGTATGA 645 0.4078 MEIDLNQEPFDQARRSVMIFDSILNEIESTHGRIEECIRHLEAVTARATQRQRWRHGHTPLQVSNLTAWLEAANNQGEYIADLEVADFISEEGTTRSEKSDKRNNTFLIDKALEIDTDKTGSNAREVFNCNICLDMAKDPILTCCGHLFCWACFYQLSYAYSNAKECSVCRGDVTDSSITPIYGNGNVTVSPSCRPKDKAKLLLLGLMHRELRV* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00083 214 SUPERFAMILY RING/U-box 122 181 - -
Pte17g00083 214 Pfam Zinc finger, C3HC4 type (RING finger) 129 176 - -
Pte17g00083 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 191 IPR013083 -
Pte17g00083 214 ProSiteProfiles Zinc finger RING-type profile. 130 171 IPR001841 -
Pte17g00083 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 97 192 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte17g00083 214 SMART ring_2 130 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00083 Pte-Chr17 1197438 1198082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00083 108 187 C3H Transcription Factor Family AT3G58030 52.500 4.61e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00083 - - qsa:O6P43_029476 236.113