Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00076 ATGTCCTCCACCACCACCACCGCCACCACCGCAGCCTCAAACAACGCTCATCTTTCAATGAATCCAAGTGATGCTGAAACAGAAAGAAAAACATATTGGTGTCATGAGTGTGATATGAGTGTTTCACTTGTTCCTTCAACATCTACAGATGCAACAAGTGATCTCCTTTGCCCACATTGCCACACCCGTTTCCTTGAACTCATGGATTCACCTCTTTCACCTTCTCATCAAAACCCTTTCGGACCTAATCCCAATTCTCTCTTTTCCTCACCCTATCTTAGGCGTTTCATCAATCAAAATCTCTCTACCACTGACAACGATGACAATTTGATTTTGCCTTCAATTTCGGAAACTGGGTCTAAGGGCTCTGTGGATTTAATCCCCACCGTAAGAATCACAACTTTGTTGCTGCAGCAGCTGGAGCTTGACCCTGTTGGCCTCGTCTGTGCTGTTTGCAGAGACCCAATTGTTGTCAATGAACACGGTAAGCAGTTGCCTTGCAAACATTTGTACCATGCTGATTGTATCGCTCCATGGTTGACCCATCATAAGTCCTGTCCACTTTGTCGGTTTAAGTTGGTGAGTGAAGAAGAGGAAGAGGATTCTGAGTTGTGGAGGATTAGAAGCCAGTTGATTTTGGGAATGATGAGATTTGCTGAGATGATGGAGGATGAAGAAGGTGATGAGTTTTATGGGTTGCAGACTACCTTGAGGCATATTGCTGCTAGGCACGGGCTTATTATTCCTGATAGTGATGCGCAGGATAGTGGGGAAATTGAGTTGTCATTTTCTACCACACACATGGTAGAAGAAGAGCCTGTGTCTGTGGGAGGAAGTGGTGATCTTCTGCAAGAAGTTTCAAATTTTGATATTGAAAGAGGAGTAATGAATTTGGGACGTAGCGTTGGCGGTGATCAAGAGACTAGGAGTGACGAAGTGATTGAATCTGGTGAAACTACCATTGCTGAATGCCTGGTATCAAGATAA 987 0.4438 MSSTTTTATTAASNNAHLSMNPSDAETERKTYWCHECDMSVSLVPSTSTDATSDLLCPHCHTRFLELMDSPLSPSHQNPFGPNPNSLFSSPYLRRFINQNLSTTDNDDNLILPSISETGSKGSVDLIPTVRITTLLLQQLELDPVGLVCAVCRDPIVVNEHGKQLPCKHLYHADCIAPWLTHHKSCPLCRFKLVSEEEEEDSELWRIRSQLILGMMRFAEMMEDEEGDEFYGLQTTLRHIAARHGLIIPDSDAQDSGEIELSFSTTHMVEEEPVSVGGSGDLLQEVSNFDIERGVMNLGRSVGGDQETRSDEVIESGETTIAECLVSR* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00076 328 Pfam Ring finger domain 149 190 IPR001841 -
Pte17g00076 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 206 IPR013083 -
Pte17g00076 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 193 - -
Pte17g00076 328 ProSiteProfiles Zinc finger RING-type profile. 149 190 IPR001841 -
Pte17g00076 328 MobiDBLite consensus disorder prediction 1 23 - -
Pte17g00076 328 SUPERFAMILY RING/U-box 143 195 - -
Pte17g00076 328 Pfam zinc-ribbon 31 68 IPR039525 GO:0061630
Pte17g00076 328 SMART ring_2 149 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00076 Pte-Chr17 1156681 1159912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00076 25 193 C3H Transcription Factor Family AT3G60080 37.811 2.70e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00076 K11982 - qsa:O6P43_001293 254.218