Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00068 ATGGCACCTGTGAGTCTCCCACCTGGATTCAGGTTCCATCCAACAGATGAAGAACTTGTTGCTTACTACCTAGAAAGGAAAATTACTGGCAGGACTATAGAGCTTGAAATTATCCCAGAAGTTGATCTCTACAAATGTGAGCCGTGGGATTTACCAGAGAAGTCAGTTTTGCCAAGCAAAGATTTAGAATGGTACTTCTACAGCCCGAGAGATCGGAAGTATCCAAATGGGTCGAGGACTAACCGAGCAACGAAAGCTGGTTACTGGAAGGCAACAGGAAAAGATAGACCTGTGCACTCTAACAAGAGGCCAGTTGGAATGAAGAAGACTTTGGTTTATTACAGAGGGAGAGCCCCACACGGGATAAGAACTAACTGGGTGATGCATGAGTATCGCCTTCTTGAATCAGTGTCTGGAACTGCCGCTTCTTCTTCTTTGAAGGATTCTTATGCATTGTGCCGTATATTCAAGAAAATAATACAAATTCCCAGAGCTAAAGAAGAAAAACAAATTGAGGAGACCAAGAGGGAATCAGTATGTGTCTCCGATGAACGATTAGGGGAAGACTCAAGTGGCCATGAGATTTCCAGAGAAACAGTACCAATAGAAAAGTTCAGTCATTGCAATTATAATCCTTATACATTTCCATGTGATGCTTCTTCTTCTGATATCACTCAAGGCACACCAGCTGAAACTGGCATAGCAGATGATTTCCAGGCTCAACTTGTATCTGATGAAGCAAACAGTTGTGCTGCTAATCCATATTCAATTAGTATGGACTATTCATCAGAGTTATTTCAGGATTTACAGCAACCAATATATGCAAGCCTCCCTTATCAACCTCCACATCATTTGGAATTTGAAGATTTCTCTCAGATGAACTTTATGGATACAAAGTGCTTGAAGCCTGAAGTGACTGATCATCAATACATGTACGAGCAGTACCGAGATTGTATCAATGGAACCCTTGAAGAGATCATCTCTTTGTGTTCCACCAAAGACAATGCCGTTCCCCTCTCAATGCTGGATATATAA 1035 0.4164 MAPVSLPPGFRFHPTDEELVAYYLERKITGRTIELEIIPEVDLYKCEPWDLPEKSVLPSKDLEWYFYSPRDRKYPNGSRTNRATKAGYWKATGKDRPVHSNKRPVGMKKTLVYYRGRAPHGIRTNWVMHEYRLLESVSGTAASSSLKDSYALCRIFKKIIQIPRAKEEKQIEETKRESVCVSDERLGEDSSGHEISRETVPIEKFSHCNYNPYTFPCDASSSDITQGTPAETGIADDFQAQLVSDEANSCAANPYSISMDYSSELFQDLQQPIYASLPYQPPHHLEFEDFSQMNFMDTKCLKPEVTDHQYMYEQYRDCINGTLEEIISLCSTKDNAVPLSMLDI* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00068 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 236 - -
Pte17g00068 344 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Pte17g00068 344 ProSiteProfiles NAC domain profile. 6 158 IPR003441 GO:0003677|GO:0006355
Pte17g00068 344 FunFam Nac domain-containing protein 86 15 161 - -
Pte17g00068 344 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Pte17g00068 344 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00068 Pte-Chr17 1055540 1058488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00068 1 332 NAC Transcription Factor Family AT1G54330 52.450 1.65e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte17g00068 NAM 1.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00068 - - gmx:100808325 490.345