Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00067 ATGACACAGCCATCGGTGCCTCCGCCGTTGGCTTCACCGCTGGCACCGCCATCACCGCCTCCGTTACCTCCTCCTTCACTGTCGCCGTCTCAACAACCTGTTGCCGGAGTTCAAGTTCGGTGTGCAGGTTGTCACATGATCCTGACTGTTGCTCGTGGTGTGATGGAGTTTGCTTGTCCTACCTGCAGAATGCCGCAAAGACTTCCGCCGGAGCTCATGACGGCGTCGTTGACGTCACCACTCCCGTTGAAGCCTCATGTTCAGGCGCACGGCATTGACCCAACTAAGATGCAGTTGCCTTGTGCTAAATGCAAGGCTATTCTCAATGTGCCTCATGGATTGAGTCGGTTCAGCTGTCCTCAGTGTGGTGTTGACCTCGCTGTCGACCTGTCTAAGATTAAGCATTTTGTGGCTGCCGGAGTTCATGAAGAGGAGGTTAATGAGCTGGCTGTTGAAGTGGAGCGGGAGGAAGATGAAGGTGGCATGGTTGGAGAAACATTTACAGATTATCGTCCTGCCAAGCTATCTATTGGACCTCCTCATCCAGATCCTATAGTGGAGACTTCGTCCTTATCAGCAGTTCAGCCACCTGAGCCTACTTATAATCTAAAGATTAAAGATGAACTGGAAAGTTCTAAGGCATTGTCATGCTTGCAGATCGAGACATTAGTCTACACTTGTCAGAGACACCTCCAGCACCTTGCAGATGGTTCTCGAGCAGGATTCTTTGTCGGAGATGGTGCTGGAGTGGGTAAAGGTCGTACAGTTGCTGGATTAATCTGGGAGAACTGGCAACATGGAAGGAGGAAAGCACTGTGGATTTCAGTTGGTTCAGACTTGAAGTTTGATGCCCAAAGAGATTTGGCTGATGTTGGTGCAAGCTGTATCGAAGTGCATGCTTTGAACAAGCAACCTTACTCTAAGCTTGATTCGAAGGCTGTCGGGATCAGGGAGGGTGTTATTTTCTCGACATACAACAGTCTCATAGCATCCTCTGAGAAAGGACGTACGCGTATGCAACAGCTTATTCAGTGGTGTGGCCCAGAATTTGATGGTCTTCTTGTATTTGATGAGTGCCACAAAGCAAAAAATTTGGTACCTGAATCTGGGAGTCAACCTACACGAACAGGTGAAGCGGTAGTTGAGATTCAGGTTAAACTACCTGAAGCTCGTGTGGTTTATTGCTCTGCCACTGGTGCATCTGAACCTCGGAACATGGGTTATATGGTTCGACTTGGTCTCTGGGGAGATGGCACATCATTTACTGATTTCAAGGAATTTCTAGGTGCCCTTGATAAAGGTGGTGTTGGAGCACTTGAACTTGTTGCCATGGACATGAAAGCAAGGGGCATGTATGTTTGTCGAACCCTTAGCTACAAAGGGGCAGAGTTTGAAGTTATTGAGGCCCCATTAGAGGCTGACATGATGGATATGTATACAAAGGCAGCAGAATTTTGGGCACAGTTGCGAGTTGAATTGATGGCAGCTGGTGCTTTTATTACAAATGATAAACCTAATCCCAGTCAAGTATGGAGATTGTATTGGGCAAGCCATCAGCGTTTCTTTAGACATATGTGTATGTCTGCTAAAGTCCCTGCTGCCGTGAGACTGGCGAAGCAAGCACTGTTGGAGGATAAGTGTGTAGTGATTGGCCTTCAGAGTACTGGAGAAGCACGTACTGAGGAACATGTAACGAAATATGGCCTTGAACTTGATGACTTTGTATCTGGTCCTCGAGAAGTATTGTTGAAATATGTGGAGGAGAATTACCCTTTACCTGAAAAGCCTGAACCTCTGCCAGGAGAAGATAGTGTAAAAGAGCTCCAACGCAAGAGACACTCAGCAAGTCCCAGTGTTTCTGTCAAAGGAAGGGCGAGGAAGATTGCTAAATGGAAACCTGCTAGTGATGACGAAAGTGAGGAGGAATCTGAGAGTGATTCTGATCAGGAATCTACAGAATCTGATGATGAGTTTCAAATCTGTGAGATTTGCAACTCTGAGGAGGAAAGGAAAAAATTGCTCAAATGTTCCTGTTGTTCGCGACTGGTCCATCCCACATGCCTAGTTCCACCAGTAAGCGATATAGTTCCAGAAGACTGGTCATGCCATTCATGCAAAGAGAAGACGGAAGAATACCTTCAAGCTAGGCATGCGTACATTGCTGAACTTCAGAGAAGGTATGATGCGGCCTTGGAGCGCAAGAACAAAATATTGGAAATAATCCGCTCTCTACATCTACCAAACAATCCTTTGGACGATATTATTGACCAGCTTGGAGGCCCTGACAAAGTAGCAGAAATGACAGGAAGAAGAGGAATGCTTGTGCGGGCCTCTAGTGGGAAAGGTGTTACTTATCAGGCACGCAATTCAAAAGATGTCTCCATGGAAATGGTCAACATGCATGAGAAGCAGCTTTTTATGGATGGTAAAAAGGTAGTTGCAATTATTTCTGAAGCTGGGTCAGCTGGTGTTTCCTTGCAGGCAGATCGAAGAGTGACAAATCAGAGAAGAAGAGTTCATTTAACTCTTGAACTTCCTTGGAGTGCTGATCGCGCTATTCAACAGTTTGGAAGAACACATAGGTCCAATCAAGCTTCTGCTCCTGAATACAGATTGCTATTTACAAACCTTGGTGGAGAGCGCCGGTTTGCATCAATCGTTGCTAAAAGATTAGAATCTCTTGGAGCCCTAACACAGGGAGACCGCAGGGCTGGGCCTTCTTTAAGCGCCTATAACTACGACAGTGCTTATGGAAAGAGGGCGCTTGTGATGATGTATAAAGGAATAATGGAGCAGGATTCTCTGCCAGTTGTTCCTCCAGGATGCACATCTGATAATCACGATTCCACTTTAGACTTCATTATCAAGGCAAAAGCTGCTTTGATATCTGTTGGAATAGTTAGGGACTCACTTGTTAATGGTAAAGATCCTGGCAAGTTTTCAGGCCGCATAATTGATTCCGACATGCATGATGTTGGAAGATTTTTAAACCGGCTTTTGGGATTGCCTCCTGAAATTCAGAACAGGCTTTTTGAGTTATTTGTCAGCATATTGGATCTCCTCATTCAGAATGCACGCATTGAAGGGAACCTTGATTCTGGCATTGTCGATATGAAAGCAAACCATATTGAATTATGTGGAATTCCAAAGACAGTACATGTTGATCATATGTCTGGTGCATCAACTGTGCTCTTTACTTTTATCATGGATCGAGGAATAAGTTGGGAGACTGCTAAAAGCATGCTTGAAGAGAAGCAGAAGGATGGGCTTGGTTCAACCAATGATGGATTTTATGAATCAAGGAGGGAGTGGTTAGGAAAACGCCACTTCATTTTGGCATTTGAAAGTTCTTCATCTGGGTCATATAAGATTGTCCGTCCTCGTGCAGGAGAATCACATAGGGAAATGCCTTGGGCTGAGGTAAAAGCCAAATATAGAAAATTATCATCTATAGAAAAGGCTCAGAGTGGATGGACAGATGAGTATGATCTTTCTTCAAAACAGTGTATGCATGGCCCCAACTGTAAGCTTGGGAACTTTTGTACTGTCGGGAGGAGAATACAGGAGGTAAATGTCTTAGGTGGACTTATTCTTCCTGTTTGGGGAACTATCGAGAAAGCCCTTTCGAAGCAGATTCGACTGAGCCATAAGCGGATCCGTGTTGTACGCATAGAGACGACTATTGATAACCGGCGAATAGTTGGTCTGCTTGTTCCTAATGCAGCTGTTGAATCTGTGCTTCAAGATTTAGCATGGGTTCAAGAGATTGATGATTGA 3777 0.4527 MTQPSVPPPLASPLAPPSPPPLPPPSLSPSQQPVAGVQVRCAGCHMILTVARGVMEFACPTCRMPQRLPPELMTASLTSPLPLKPHVQAHGIDPTKMQLPCAKCKAILNVPHGLSRFSCPQCGVDLAVDLSKIKHFVAAGVHEEEVNELAVEVEREEDEGGMVGETFTDYRPAKLSIGPPHPDPIVETSSLSAVQPPEPTYNLKIKDELESSKALSCLQIETLVYTCQRHLQHLADGSRAGFFVGDGAGVGKGRTVAGLIWENWQHGRRKALWISVGSDLKFDAQRDLADVGASCIEVHALNKQPYSKLDSKAVGIREGVIFSTYNSLIASSEKGRTRMQQLIQWCGPEFDGLLVFDECHKAKNLVPESGSQPTRTGEAVVEIQVKLPEARVVYCSATGASEPRNMGYMVRLGLWGDGTSFTDFKEFLGALDKGGVGALELVAMDMKARGMYVCRTLSYKGAEFEVIEAPLEADMMDMYTKAAEFWAQLRVELMAAGAFITNDKPNPSQVWRLYWASHQRFFRHMCMSAKVPAAVRLAKQALLEDKCVVIGLQSTGEARTEEHVTKYGLELDDFVSGPREVLLKYVEENYPLPEKPEPLPGEDSVKELQRKRHSASPSVSVKGRARKIAKWKPASDDESEEESESDSDQESTESDDEFQICEICNSEEERKKLLKCSCCSRLVHPTCLVPPVSDIVPEDWSCHSCKEKTEEYLQARHAYIAELQRRYDAALERKNKILEIIRSLHLPNNPLDDIIDQLGGPDKVAEMTGRRGMLVRASSGKGVTYQARNSKDVSMEMVNMHEKQLFMDGKKVVAIISEAGSAGVSLQADRRVTNQRRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALVMMYKGIMEQDSLPVVPPGCTSDNHDSTLDFIIKAKAALISVGIVRDSLVNGKDPGKFSGRIIDSDMHDVGRFLNRLLGLPPEIQNRLFELFVSILDLLIQNARIEGNLDSGIVDMKANHIELCGIPKTVHVDHMSGASTVLFTFIMDRGISWETAKSMLEEKQKDGLGSTNDGFYESRREWLGKRHFILAFESSSSGSYKIVRPRAGESHREMPWAEVKAKYRKLSSIEKAQSGWTDEYDLSSKQCMHGPNCKLGNFCTVGRRIQEVNVLGGLILPVWGTIEKALSKQIRLSHKRIRVVRIETTIDNRRIVGLLVPNAAVESVLQDLAWVQEIDD* 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00067 1258 Gene3D - 215 410 IPR027417 -
Pte17g00067 1258 SMART PHD_3 660 706 IPR001965 -
Pte17g00067 1258 FunFam Protein strawberry notch homolog 2 211 411 - -
Pte17g00067 1258 ProSitePatterns Zinc finger PHD-type signature. 661 705 IPR019786 -
Pte17g00067 1258 Pfam PHD-finger 660 708 IPR019787 -
Pte17g00067 1258 Pfam C-terminal domain on Strawberry notch homologue 749 1037 IPR026937 -
Pte17g00067 1258 Pfam P-loop containing NTP hydrolase pore-1 180 480 IPR039187 -
Pte17g00067 1258 Coils Coil 720 740 - -
Pte17g00067 1258 MobiDBLite consensus disorder prediction 599 613 - -
Pte17g00067 1258 ProSiteProfiles Zinc finger PHD-type profile. 658 708 IPR019787 -
Pte17g00067 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 423 IPR027417 -
Pte17g00067 1258 MobiDBLite consensus disorder prediction 638 654 - -
Pte17g00067 1258 MobiDBLite consensus disorder prediction 1 31 - -
Pte17g00067 1258 Coils Coil 139 159 - -
Pte17g00067 1258 MobiDBLite consensus disorder prediction 592 654 - -
Pte17g00067 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 804 909 IPR027417 -
Pte17g00067 1258 MobiDBLite consensus disorder prediction 1 30 - -
Pte17g00067 1258 SUPERFAMILY FYVE/PHD zinc finger 649 712 IPR011011 -
Pte17g00067 1258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 719 IPR013083 -
Pte17g00067 1258 PANTHER STRAWBERRY NOTCH-RELATED 32 1252 IPR026741 GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte17g00067 AAA_34 3.5e-132 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00067 K26273 - qsa:O6P43_029419 2066.97