Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00062 ATGAGTCAAGATATGATAAATGAGCCTTGTAACTCTGAGAACGTGAATAAAGTGACAAATGGTGCTATCAGCTCAGCTCAGAATCCAACAAATGATGAACACAATAATGCGGAGCATGATTTGAAGACTGATCATAAAAATTTGAGAAGCCCTCCATTATCTGAACATCAAAAACCTGAAGCAGGATCAGCTAAGCTATCATCTGATTCATCTGGTGGAAATCCAAGCCAAAGAATGCCTCCAACCTCAAATTCTGAAGCACCAACTACCACAGGGTCTTCTGCAAAGGCAATGCCTACACCTACTAGGAGTCATGGTCACGGAGGCAGCTCACCAGGGTCAGATACAGTATCAGCTCCCTTCAAGCCACATACTGGTGGTGCCATAAGGTGGGATGCCATTAACATGGTTTCCAAAGACAGCCCTTTAAATCTAAGCAATTTTCGGCTGCTGAAGCGCCTCGGGTACGGAGACATTGGAAGTGTCTATCTTGTGGACCTTAGAGGAACTAAAACCCACTATGCTATGAAGGTCATGGACAAGGCATCACTTGAAAGCAGAAATAAACTACTAAGGGCTCAAACAGAAAGAGAGATACTAGGCCTTCTTGATCATCCATTCTTGCCCACTTTGTATTCTCACTTCGAAACTGACAAGTTTTACTGCTTGGTTATGGAGTTCTGTAGTGGAGGTAATCTTCATTCCCTCAGACAGAAGCAGCCTAGCAAATATTTCACCGAAGAAGCTGCAAGGTTTTATGCGTCAGAGGTTTTGTTAGCTCTCGAGTACCTACATGTGCTAGGGATTGTATACAGAGACCTGAAGCCTGAGAATGTGTTAGTCAGAGAAGAAGGCCACATTATGCTCTCAGATTTCGATCTGTCACTGCGTTGCTCGGTCAGCCCTACCCTTGTGAAGTCCTCATCTACTCATGTCAGTGGTCTTTGCAATGGTTCTGCGGCCATTTTCAGTGATGATAATGCAGTTCAAGGTTGCATACAGCCCTCAAGTTTCTTCCCACGAATTTTACATTCGAAAAAGAATCGAAAATCAAAGTCCGATTTCGGACTTTGCGTAGGAGGATCCCTTCCTGAGCTCATGGCAGAACCAACAAATGTGCGATCCATGTCATTTGTTGGAACGCACGAATACCTAGCCCCAGAAATCATTCGTGGTGAGGGGCATGGCAGTGCAGTAGATTGGTGGACATTGGGTATCTTCTTGTATGAACTCCTTCATGGAACAACTCCATTCAAGGGTGCAGGAAATCGCGCAACACTATTCAATGTTGTTGGTCAGCCACTAAGATTTCCTGAAACTCCTCATGTTAGTACATCAGCTCGTGATCTTATCAAAGGGCTTTTGATGAAGGAGCCCCAGAAAAGATATGCATACACAAGAGGTGCTACAGAGATTAAACAACATCCATTTTTTGAAGGAGTCAACTGGGCTCTAGTAAGAAGTGCCACACCTCCCCACATACCTGATCCTGTAGATTTTTCACAGTATGCTACCAAAGAGTCATCCTCTATAGTCAAGAAGATGAACGATCATGTTGCAGTTGCTCATAAAAAAGACAGTGGTAGTGTCAATGATTCTGCTTTTGTAAATTTTGAGTATTTTTAG 1626 0.4354 MSQDMINEPCNSENVNKVTNGAISSAQNPTNDEHNNAEHDLKTDHKNLRSPPLSEHQKPEAGSAKLSSDSSGGNPSQRMPPTSNSEAPTTTGSSAKAMPTPTRSHGHGGSSPGSDTVSAPFKPHTGGAIRWDAINMVSKDSPLNLSNFRLLKRLGYGDIGSVYLVDLRGTKTHYAMKVMDKASLESRNKLLRAQTEREILGLLDHPFLPTLYSHFETDKFYCLVMEFCSGGNLHSLRQKQPSKYFTEEAARFYASEVLLALEYLHVLGIVYRDLKPENVLVREEGHIMLSDFDLSLRCSVSPTLVKSSSTHVSGLCNGSAAIFSDDNAVQGCIQPSSFFPRILHSKKNRKSKSDFGLCVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTLGIFLYELLHGTTPFKGAGNRATLFNVVGQPLRFPETPHVSTSARDLIKGLLMKEPQKRYAYTRGATEIKQHPFFEGVNWALVRSATPPHIPDPVDFSQYATKESSSIVKKMNDHVAVAHKKDSGSVNDSAFVNFEYF* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00062 541 SUPERFAMILY Protein kinase-like (PK-like) 145 516 IPR011009 -
Pte17g00062 541 Gene3D Transferase(Phosphotransferase) domain 1 228 297 - -
Pte17g00062 541 CDD STKc_phototropin_like 146 499 - -
Pte17g00062 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Pte17g00062 541 Gene3D Transferase(Phosphotransferase) domain 1 353 496 - -
Pte17g00062 541 Gene3D Phosphorylase Kinase; domain 1 146 227 - -
Pte17g00062 541 MobiDBLite consensus disorder prediction 33 53 - -
Pte17g00062 541 Pfam Protein kinase domain 353 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte17g00062 541 Pfam Protein kinase domain 149 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte17g00062 541 ProSiteProfiles Protein kinase domain profile. 148 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte17g00062 541 MobiDBLite consensus disorder prediction 1 122 - -
Pte17g00062 541 SMART serkin_6 148 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte17g00062 541 FunFam Serine/threonine-protein kinase AGC1-7 371 496 - -
Pte17g00062 541 PANTHER FLIPPASE KINASE 1-RELATED 38 507 - -
Pte17g00062 541 FunFam Serine/threonine-protein kinase D6PK-like 146 231 - -
Pte17g00062 541 MobiDBLite consensus disorder prediction 1 32 - -
Pte17g00062 541 FunFam serine/threonine-protein kinase D6PK-like 232 299 - -
Pte17g00062 541 MobiDBLite consensus disorder prediction 61 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00062 Pte-Chr17 952011 954009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00062 116 542 AGC Kinase Gene Family AT1G79250 75.676 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pte17g00062 Pkinase 1.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00062 - - qsa:O6P43_029431 732.25