LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte17g00054	ATGGCTCGTGGAAAGATTCAGCTGAAGCGTATTGAGAATCCTGTCCACCGGCAAATCACCTTCTGCAAGCGCCGAGCAGGACTTCTTAAGAAGGCCAAGGAGCTCTCCATACTTTGTGATGCAGAAATTGGGGTTTTCGTTTTTTCTGCTCATGGAAAGCTCTATGAGCTGCCCACTAACGGAAACATGCAAGGGCTTATTGAGAGGTACTTGAGTTACACAGGAGGAGGTCAGCCTGAGGCAGCCAGTGGAACACTTGAACTGGATCCAAAAGAGGAGGTTAAAATGCTGAAACAGGAGATTGAGACACTGCAAAAAGGTGATCTCAGGCATATGTTTGGCCAGGGAATGGGGACTATGAACATTGATGAGTTACAAGCACTCGAAAAACAACTTGAACTGTGGATTTATCATACACGATCAATGAAGATTAACTTCATGCTAAGGGAAATTCAAACTTTGAGGGATAAGGAGGGAATGCTTCAAGCAGCGAACCAGTATCTCCAAGACAAGATTGCCAACGCTGGAATGACTAATTACTTTGACGCCGCTAACATGTTCCCACTAACCATAGAAGATGATATATTTCAGTTCTAG	597	0.4439	MARGKIQLKRIENPVHRQITFCKRRAGLLKKAKELSILCDAEIGVFVFSAHGKLYELPTNGNMQGLIERYLSYTGGGQPEAASGTLELDPKEEVKMLKQEIETLQKGDLRHMFGQGMGTMNIDELQALEKQLELWIYHTRSMKINFMLREIQTLRDKEGMLQAANQYLQDKIANAGMTNYFDAANMFPLTIEDDIFQF*	199

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte17g00054	198	Pfam	K-box region	91	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Pte17g00054	198	ProSiteProfiles	K-box domain profile.	87	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Pte17g00054	198	Gene3D	-	15	76	IPR036879	GO:0003677\|GO:0046983
	Pte17g00054	198	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	56	IPR002100	GO:0003677\|GO:0046983
	Pte17g00054	198	CDD	MADS_MEF2_like	2	78	IPR033896	GO:0000977\|GO:0045944
	Pte17g00054	198	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Pte17g00054	198	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Pte17g00054	198	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Pte17g00054	198	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Pte17g00054	198	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	148	-	-
	Pte17g00054	198	SUPERFAMILY	SRF-like	3	79	IPR036879	GO:0003677\|GO:0046983
	Pte17g00054	198	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte17g00054	Pte-Chr17	855757	858727	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte17g00054	1	199	MADS-box Gene Family	AT1G71692	56.621	2.08e-71	214

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Pte17g00054		K-box	2.8e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte17g00054	-		-	gmx:100783345	272.322