Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00040 ATGGGGTGCATTTGTTCAAAAGACAACTCAGACAAAGTGGATGACTATGCAAAACAACAAGATTTTAACATGTCTTCTGTGCAAGTCATTGCTCCTTCCTCAAAGAGAGATGATATTAGAATTCCAGACTCAGTGAATGGTGGTATCGATGATAAGAGAGATATCGTGGGAAGGCCTAAAACGAGCAACCATCCTGATCATAAAAGATGGTCCACCATGGATTTGAGTGTTCACGGAGGAAAGCCGGATATGTCAAAGAGCACGCCGTCTGGTGCGGCGGATGACTGGCCTTCATGGTTAACTTCTGTTGCACCAGAAGCCGTCCAGGGCTGGACTCCCCGCCGTGCAGATTCCTTTGAAAAGCTAAACAAGATTGGGCAAGGAACTTACAGCAGTGTTTATAAGGCTCGTGACCTTAAAACTAATAAAATTGTGGCACTGAAGAAGGTTCGTTTTGTAAACATGGATCAAGAGAGTGTGCGCTTTATGGCAAGGGAAATCAACATTTTGCGTAAACTAGACCATCCAAACGTAATGAAGCTCGAAGGTATTGTAACATCAAGAATGTCAGACAGCTTATATCTCGTTTTTGAGTACATGGAACATGACCTTGCTGGGTTGGCTGCTAGACCTGGTGTCAAGTTTACTGAATCACAGATAAAATGCTATATGCAACAATTACTTCGTGGACTTGAACACTGTCACAGGCGCGGTATACTCCATCGGGACATCAAGGGTTCGAATCTTTTGATAGACGACAATGGAGTTCTGAAGATCGGAGATTTTGGTCTGGCAGCATGTTATGACCCCACCAAGAAGCAGACATTAACCAGTCGTGTCGTCACACTGTGGTATAGGGCACCGGAACTTTTGCTGGGTGCTACAGATTATGGACCTGAAATTGACTTGTGGAGTGCCGGTTGCATCCTTGCTGAGCTGTTTGCTGGGAAGCCTATCATGCCAGGAAGAACAGAAGTGGAGCAAATGCACAAGATTTTCAAGCTATGTGGTTCTCCATCTGACCATTACTGGAAGAAAACCAAGTTTCCACATGCTACAAGTTTTAAGCCACAAAATACTTATAAGTGCCGTATTTCGGAGACATTTAAAGGCTTCCCTTCTACGGCTGTGGGTCTCATTGAGAAGCTTCTTGCTATAGAACCAGAAGACCGAGGTTCTGCAGTTTCTGCATTGAACAGTGAGTTCTTCAGTACAAATCCTCTCCCTTGCGATCCATCCAATTTACCAAAATATCCTCCAAGCAAGGAATACGAAGTGAAGGTTCAAGATGAGAAAGATAAAAGGAAAAAGGAAGAAAATGTCAAAGGACGTGGTCCTGTCTCAGTTGTAAGGGGTACAATAAATACGAAGGCACTGCCAACTCCACAATTCAATGCTGAGAGAGACATAATAGTTATACAGAGAGGAACAAATGCAGAATCCAGTCGTAATGATAAATTCCATGGCAATGGGGGAGCAAGCTGTGCTATTGAGACCAGAGAAAAGAATGGTTACATTCATTCAACTTCAATGATTCATCCTGCTGCATCAAGGCCTTCGTGGAATAGGACGACGTCGATGAGAAAAATTCATGAGGTAGGCATGTCTCAAAAACCCAACGCAGCAGTAGACGTATCCGACAAAAGAGATGAAACCACATCCACCAAACAAAGCACGGGTTATGCGCCAAAGAAAAACAGGATTCACCATTCAGGACCATTGGTACCTCCTGGAGGTAACATGGATGACATGCTGAAAGAGCATGAGAGACTCATGCAAGAGGCCTTCCGTAAAGCTCGTGTGGACAGGAAACCAAGCAACCGATAG 1827 0.4417 MGCICSKDNSDKVDDYAKQQDFNMSSVQVIAPSSKRDDIRIPDSVNGGIDDKRDIVGRPKTSNHPDHKRWSTMDLSVHGGKPDMSKSTPSGAADDWPSWLTSVAPEAVQGWTPRRADSFEKLNKIGQGTYSSVYKARDLKTNKIVALKKVRFVNMDQESVRFMAREINILRKLDHPNVMKLEGIVTSRMSDSLYLVFEYMEHDLAGLAARPGVKFTESQIKCYMQQLLRGLEHCHRRGILHRDIKGSNLLIDDNGVLKIGDFGLAACYDPTKKQTLTSRVVTLWYRAPELLLGATDYGPEIDLWSAGCILAELFAGKPIMPGRTEVEQMHKIFKLCGSPSDHYWKKTKFPHATSFKPQNTYKCRISETFKGFPSTAVGLIEKLLAIEPEDRGSAVSALNSEFFSTNPLPCDPSNLPKYPPSKEYEVKVQDEKDKRKKEENVKGRGPVSVVRGTINTKALPTPQFNAERDIIVIQRGTNAESSRNDKFHGNGGASCAIETREKNGYIHSTSMIHPAASRPSWNRTTSMRKIHEVGMSQKPNAAVDVSDKRDETTSTKQSTGYAPKKNRIHHSGPLVPPGGNMDDMLKEHERLMQEAFRKARVDRKPSNR* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00040 608 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Pte17g00040 608 MobiDBLite consensus disorder prediction 539 584 - -
Pte17g00040 608 CDD STKc_CDK9_like 119 403 - -
Pte17g00040 608 FunFam probable serine/threonine-protein kinase At1g54610 202 443 - -
Pte17g00040 608 Pfam Protein kinase domain 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte17g00040 608 PANTHER CELL DIVISION PROTEIN KINASE 117 409 - -
Pte17g00040 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Pte17g00040 608 Gene3D Phosphorylase Kinase; domain 1 106 201 - -
Pte17g00040 608 Gene3D Transferase(Phosphotransferase) domain 1 202 443 - -
Pte17g00040 608 SUPERFAMILY Protein kinase-like (PK-like) 112 411 IPR011009 -
Pte17g00040 608 SMART serkin_6 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte17g00040 608 MobiDBLite consensus disorder prediction 36 74 - -
Pte17g00040 608 FunFam probable serine/threonine-protein kinase At1g54610 106 201 - -
Pte17g00040 608 Coils Coil 421 441 - -
Pte17g00040 608 MobiDBLite consensus disorder prediction 31 94 - -
Pte17g00040 608 ProSiteProfiles Protein kinase domain profile. 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00040 Pte-Chr17 693917 699492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00040 111 442 Core Cell Cycle Gene Families AT5G10270 52.286 4.82e-118 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pte17g00040 Pkinase 1.5e-72 CL0016