Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00020 ATGGGACGTTCACCTTGTTGTGAGAAAGCTCACACCAACAAAGGTGCCTGGACCAAAGAAGAAGATCAGCGCCTCATAGAATACATACGTGTTCATGGTGAAGGCTGCTGGCGCTCTCTTCCAAGAGCTGCTGGTTTGCTTAGATGTGGCAAGAGTTGTAGATTAAGGTGGATAAACTACCTAAGGCCCGACCTTAAACGTGGAAATTTCACCCAAGAAGAAGACGAGTTGATAATCAAATTACACAGTTTGCTCGGAAACAAATGGTCTCTAATTGCTGGGAAGTTACCTGGTAGAACTGACAATGAAATAAAAAACTATTGGAACACACACATCAAACGCAAGCTCATAAACCATGGGATAGACCCACAGACCCACAGACCATTAAACCAAGTAAACTCTGTGGGCAAAATAATTACATCTTTGGATTTCAGAAACGCTTCTCCAACATCTATGGCTTATGCAGACGCTACGAAGCAGAGCGAATTTGAAGTTGCCCAGGAAGTGAAGCCTGAAACAGAGAAAAGTGAAGATGCAAACTATAACAGCACAACAAGTGGTACCACTAGTGAGGAAGAAGAACCCCCACACCCACAGCAACAAGGTTTGTGTATGAGTAAAGGCGAGGTCAACTTAGAGCTTTCAATTGGGATTCATTGCGAACCAAGTGGGATGAACTCGGCCGAATCTAAATTGCAGGAGGGTCCTGGTGAAATGGTTCAGTCGTATAGGGTGGGCCCCACAGGCAGTGTGTGTTTGTGTTGCCGGTTGGGAATTGAGAGGAGTGAGTTGTGTAGGAGTTGTGAGAAGTCAGACGCTTTTGGGTTCACTAGATATTGTGCAGCTACAGCCTACAGCACAGCTTTGAGACCCTGA 876 0.4543 MGRSPCCEKAHTNKGAWTKEEDQRLIEYIRVHGEGCWRSLPRAAGLLRCGKSCRLRWINYLRPDLKRGNFTQEEDELIIKLHSLLGNKWSLIAGKLPGRTDNEIKNYWNTHIKRKLINHGIDPQTHRPLNQVNSVGKIITSLDFRNASPTSMAYADATKQSEFEVAQEVKPETEKSEDANYNSTTSGTTSEEEEPPHPQQQGLCMSKGEVNLELSIGIHCEPSGMNSAESKLQEGPGEMVQSYRVGPTGSVCLCCRLGIERSELCRSCEKSDAFGFTRYCAATAYSTALRP* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00020 291 CDD SANT 69 112 IPR001005 -
Pte17g00020 291 CDD SANT 16 61 IPR001005 -
Pte17g00020 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte17g00020 291 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 192 - -
Pte17g00020 291 Gene3D - 14 66 - -
Pte17g00020 291 Gene3D - 69 135 - -
Pte17g00020 291 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte17g00020 291 MobiDBLite consensus disorder prediction 163 203 - -
Pte17g00020 291 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Pte17g00020 291 FunFam MYB-related transcription factor 13 66 - -
Pte17g00020 291 MobiDBLite consensus disorder prediction 163 177 - -
Pte17g00020 291 SMART sant 66 114 IPR001005 -
Pte17g00020 291 SMART sant 13 63 IPR001005 -
Pte17g00020 291 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte17g00020 291 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pte17g00020 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte17g00020 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte17g00020 291 MobiDBLite consensus disorder prediction 178 196 - -
Pte17g00020 291 FunFam Myb transcription factor 68 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00020 Pte-Chr17 311945 313681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00020 1 218 MYB Transcription Factor Family AT4G09460 63.677 1.61e-95 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte17g00020 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00020 K09422 - jre:109006329 348.977