Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00017 ATGGGGAGAGGGAAGATTGAGATCAAGAGGATTGAGAACACTACTAACCGCCAAGTTACCTTCTGTAAACGTAGGAATGGGCTGCTGAAGAAAGCTTATGAACTATCAGTTCTCTGTGATGCAGAAGTGGCTCTCATTGTCTTCTCTAGCCGTGGCCGTCTATATGAGTACTCTAACAACAACATAAGATCAACCATAGAGAGGTACAAGAAGGCATGTCCAGATGGATCAAGCACCAGCTCTGTGACTGAAATGAATACCCAGTTCTATCAGCAAGAGTCAGCAAAGTTGAGGCAGCAAATACAAATGCTGCAAAACTCTAACAGTAACTTGATGGGGGATTCCTTGAGTAACTTGAGTGTGAAGGAACTGAAGCAGCTGGAAAATAGGCTTGAGAGAGGAATCGCTAGAATCAGGTCCAAGAAGCATGAGATGTTGCTGGCAGAGATTGAGTATTTGCAGAAAAGGGAAATGGAACTGGAAAACGATAATCTTTGCCTTCGGACGAAGATAGCAGACATTGAGAGGTTTCATCATGCAAATATGGTTTCTGGACAAGAACTCAATGCCATTCAGGCATTAGCTTCTCGCAATTTCTTTAGCCAAGCTATGATTGATGATGGGGGTGCCTATCCACAGCCAGACAAGAAGATTCTACATCTCGGGTATAATAAAACCTTAAAATATTGGCCGAGATGGTTGTGA 705 0.4312 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACPDGSSTSSVTEMNTQFYQQESAKLRQQIQMLQNSNSNLMGDSLSNLSVKELKQLENRLERGIARIRSKKHEMLLAEIEYLQKREMELENDNLCLRTKIADIERFHHANMVSGQELNAIQALASRNFFSQAMIDDGGAYPQPDKKILHLGYNKTLKYWPRWL* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00017 234 Coils Coil 121 163 - -
Pte17g00017 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte17g00017 234 Gene3D - 13 126 IPR036879 GO:0003677|GO:0046983
Pte17g00017 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 158 - -
Pte17g00017 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte17g00017 234 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
Pte17g00017 234 Coils Coil 87 107 - -
Pte17g00017 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte17g00017 234 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Pte17g00017 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte17g00017 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte17g00017 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte17g00017 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte17g00017 234 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Pte17g00017 234 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte17g00017 234 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00017 Pte-Chr17 272330 277701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00017 1 222 MADS-box Gene Family AT4G09960 74.783 5.13e-123 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte17g00017 K-box 4.6e-25 No_clan