Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00011 ATGGAAAAGCCAGCTCCAACCACTTTTGATAATTTCATGCCCTATGAATTCAACTATCATCCATATCAAGCACTTCCAGTGCCATTTCTAGAAGTTCCAAGAGAGGTAAACCATTTCGGGATCATCAAGTCTGAGAACTTGGAAGATGAAGTCAGTGAACTCAACAAGCAAATGGCGCCAACACAACAAGCACATATATCTTCATTCATGCCCTTGGAGCTCTTGGGCACTTATGGGAGTGCAAACAAGAGACTCAACATACAGAATGAAATCAACTTGAGCAATCAGGAATCCTGCAGCATAGAACGACAGAAGTTTTCAGCTCAAGATATAGTGAAAATGGCTGCATCAAGGTACATAGGGCTACATGCACCAGGACATGGCAATGTTTCCATGGCCATGCAACCATTATCTGCTTTTACTGGACTATCAGAAGGTGATATCAAAGACGTCGAACTCGTTCTCTTACTCTTGGCTGCAGCTGAAAAGGTCAGCAATGAACAGTTTGACTATGCAAAGCAATTTCTGTTTCATTGTCAATACTTGATTGCATCTAAAGCCGAAAATTGTATTCGGAGGGTTGTCCAGATCTTCGTTCAAGCTCTCCAAGAGAGAATTCAAAGAGAGATGATTGGATTGCCTATCATGGGAAATACGAGAAACGAAGAACATGAATCGATTCAACGCATGAATAGCAATTTCAAGCTCATGTGCCATGATAAAGTTCCATTTAATCAAATAATGCAATTTGCTGCAATACAATCTATGGTCGAACATCTTTCATCGAAGACTAGGATCCATGTGATTGATCTTGAACCTGGAGTAGGAGTTCGTTGGGCAGTCTTCATTCAGGCATTGGCAGAACGAGAGCAGCAGCCTGTTCAAATGTTGAAGATAACTGGTTTGGGTTTAGTAGGAAGCATCAATTTAGAGGAGGCGAAGGAAAGGTTGACTACTGTAGCTTCTTTATTGAATATACCCTTTCAGTATGATGCAGTCTTAGTGAGAGACATGTCTGAAATAAACGAAGAAGTGTTTGAAGTCGAGGAAGGTGAAGCTGTGGCTGTATACTGTCCCCTTCTACTTAGGACACTGATCTCCAGACCATCTACCTTAGAGAACTTGATGAGAGTTTTGGCAAATCTTAAACCATGTGTCACGTTGTTGCTGGAAGTGGAAGCAAACCATAATTCGCCCTCATTTATCAATCGTTTCACTGAGGCATTATTTCATTATAGTGTAGGTTTTGATGTGTTCGAAACCTGCTTCGAACACAGTGACGAGGGCTTGCAGGCAATTGTTCCAATAATGAGTGCTGGTATACGAAGCATTGTTGCAATGGAAGGCAGTGAAAGAACAGTGAGAAATGTAACGATTGATGTTTGGAGATCATTCTTTTCAAGATTTGGTATGAAGGAAGTTGGGTTTAGTGAGTCCTCGTATTGCCAAGCTAAGTTGGTGAGCAAAAGGTTTCCTAATGGAAACCATTGCACTATTCTTACAAATGGCAAGGCTCTAATGGTTGGTTGGAAGGGGAACTCATACCTTTCCGTTTCAGCTTGGACATGTCCTTGA 1575 0.4146 MEKPAPTTFDNFMPYEFNYHPYQALPVPFLEVPREVNHFGIIKSENLEDEVSELNKQMAPTQQAHISSFMPLELLGTYGSANKRLNIQNEINLSNQESCSIERQKFSAQDIVKMAASRYIGLHAPGHGNVSMAMQPLSAFTGLSEGDIKDVELVLLLLAAAEKVSNEQFDYAKQFLFHCQYLIASKAENCIRRVVQIFVQALQERIQREMIGLPIMGNTRNEEHESIQRMNSNFKLMCHDKVPFNQIMQFAAIQSMVEHLSSKTRIHVIDLEPGVGVRWAVFIQALAEREQQPVQMLKITGLGLVGSINLEEAKERLTTVASLLNIPFQYDAVLVRDMSEINEEVFEVEEGEAVAVYCPLLLRTLISRPSTLENLMRVLANLKPCVTLLLEVEANHNSPSFINRFTEALFHYSVGFDVFETCFEHSDEGLQAIVPIMSAGIRSIVAMEGSERTVRNVTIDVWRSFFSRFGMKEVGFSESSYCQAKLVSKRFPNGNHCTILTNGKALMVGWKGNSYLSVSAWTCP* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00011 524 ProSiteProfiles GRAS family profile. 144 522 IPR005202 -
Pte17g00011 524 Pfam GRAS domain family 154 522 IPR005202 -
Pte17g00011 524 Coils Coil 44 64 - -
Pte17g00011 524 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 109 516 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00011 Pte-Chr17 217985 219559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00011 151 521 GRAS Transcription Factor Family AT1G66350 27.151 3.39e-45 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte17g00011 GRAS 2.4e-73 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00011 - - gmx:100791952 427.172