Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00009 ATGCCCGACCGCTATTCTTCAGGCTGCACCGTTTATATTGGAAATCTAGATGAGAAGGTGACGGAGAGAGTCTTGTATGATATTTTAATTCAGGTAGGACAAGTGGTAGATCTTCACATGCCCAGAGACAAGGAAACTGGAAAACCAAAAGGTTTTGCTTTTGCTGAATATGAAACTGAAGAGATTGCAGATTATGCAGTCAAACTTTTCTCAGGTCTCGTGACAATTTACAACAGGACATTGAGGTTTGCGTTTCCTTCTCGTGTAAATAGTCAGTCTAATCGCTGTGGATCACATTATGGTGGCAACAATTATGATTACAGCTGTTCAGTATATGGGGCAGCCTCGGATAGATTTAGCCAACCTAGACTAGCACTTGAAGTGGTAAAAGCTGACTCCTTCTTACTACTTGGGCTTGGGAGCAGTGAAAGATTGAGTTGCGGATCTCGAGTGAGATCGGCCGATGAATCAATGGTTGAACCTCTTTCTTCTTCTCTTAGACGTAGCTTTGTCATGTTGACCATTGCCACTTGA 534 0.427 MPDRYSSGCTVYIGNLDEKVTERVLYDILIQVGQVVDLHMPRDKETGKPKGFAFAEYETEEIADYAVKLFSGLVTIYNRTLRFAFPSRVNSQSNRCGSHYGGNNYDYSCSVYGAASDRFSQPRLALEVVKADSFLLLGLGSSERLSCGSRVRSADESMVEPLSSSLRRSFVMLTIAT* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00009 177 SUPERFAMILY RNA-binding domain, RBD 3 108 IPR035979 GO:0003676
Pte17g00009 177 Gene3D - 2 118 IPR012677 -
Pte17g00009 177 CDD RRM1_SF3B4 11 83 IPR034158 -
Pte17g00009 177 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 88 IPR000504 GO:0003723
Pte17g00009 177 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 82 IPR000504 GO:0003723
Pte17g00009 177 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 6 99 - -
Pte17g00009 177 SMART rrm1_1 10 84 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00009 Pte-Chr17 185417 189184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00009 4 74 Eukaryotic Initiation Factors Gene Family AT4G34110 30.986 4.38e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00009 K12831 - vvi:100252755 151.754