Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01396 ATGGCAAATCGGAATAAGGAAGATGAGAAAATCGAGAAGGCAATTCGAAGTCTGGTGAAACTTACAGAGAATAAAAGATGTATCAACTGCAAGAGTTTGGGGCCACAATATGTCTGCACAACTTTCTGGACATTTGTATGTACAAACTGCAGTGGTGTACATCGAGAGTTTACCCACCGAGTTAAATCAGTGTCGATGGCTAAATTCACTTCAGATGAAGTTAGCGCTCTTCAAGCAGGGGGGAACGAGAAAGCAAGGCAGGTTTTCTTTAAAGATTGGGATTGCGTGCGCAATTCTTATCCTGAATCCAGTAACATACCAAAACTCCGAAATTTCATCAAGCATATCTATGTCGATAGGAGGTACACTGGTGAAAGGAAGGGCAACCAGTTCCCGACCACAGTATTGACTGACAAGGAGGAGTCCCGTCAAAGCAGAAATATTAGTTCACTGTCATTTGATGCTAGAAACTCTCACGAAAGAAGATACTCACTACGCTTTAGTGAAAGATCTAGTCCTGTTGGAAACAGCTATGAAAGAAGTTTCAGATATAATGATGAAACAGTTAGTCCTAGAATATTCCCAAGAGGTGGAAGGTCAATAAGAAGTTCTCCAAAATTCGAGATAGTTGACGATAGATTTCGGGATGAAGAATGTGGAGGTCGAAGAAGGTCAAATGTAGAAAGAAGTTCTTCACTTAATTTACAAAGGTATGGGCAAGGATCACAATCCCCAATAGCACACCATTATGTTGAAATATCGGTTGAAAATAACATTTCTAAACCCCCATCATCACCTGCTGTACGCCATGTTGCTGACATTTTCGGAGAGAATTCTTTACCTTTAATGGTGGGGGATAATGCTCAATCAAAGGAGAAGGGAGTTGAAGTTTCTCTCACGGATCAGAGCAATGTAGATGTAACGCAAGCTCCGGAAAGCATAATTGATTTGAGCGATAATTTTCAAACGCCTGGTTCTGCTGCTGCATCACAAACTCAACCCTTGTCTCAGTCTAATAATGACAGCAACTGGGCATCATTTGAGTCTACTGATACAGGGAAGGCAGGCGAAATAAAAAAAAGTATAAATAGCGTAGAAGGTTTGCTATTTGAATTGAGCGGTCCTACTTCAGATTCACCTTTTGTCCATAAGCCAGAAGTCCTTTGCCAAAAAGCTACCTCAGCTGAGAATGCAGATATTTTTTCTGCAGCTGGGACTTCGCCTTCTGTTGCACTATGGCAGATGGACTCTCCACCCCAAGGGGTTCCTGCTGCTTTGACAGTTGCATCAAGAACCACCAATGTGCCAGCACAGTCCTCTGATGGAATGCGTGTGCAACCTGAACTTAGAAGTCATGTTGACTACAATAAAATCTCTAATGAGAGATGGGCTTCCTCATCTTTTCCCAATACACAAGGGTCTTCTGGTACTCCTTCGGAAAAGTGTTCTCAAGCTCCCTCGGCACCAGCACAAGACCTTAGTTCTGGAGTCGAATCTCATAGTAGTTCACCAGAAACCAAATCCCATGGAAAAAAGGAACTCTCGGCAGAACTATTTTCGATGAGCTACTCATCTATCCGGGGACAGATGGGGGGTTGGCAGAATAGTCAACCACAATGCTTGGGGTTTAGCATGGAGCATTATCCCACGGCTTTGGCTCCAACATATCCTATCGCTGCAAATTCAACTAACCCTTTCGATATTACTGATGGAAGAACTCAAGGCCAGTTCCCTGGCATGGCTTCTTTACAAGCTGCACTACCTGGTTCAACGGCACCAAATGTAGGCATTTGGCCTGCTTCCAGTTTTGGCAATGCAAATTATCCACCTCCAATATCTCATCAACCACAATTTGCACCAGCATTACCAAATAGCACCTACATGGAACAAGTTAAGAACCATACGCCACCTAACAGACCTCAAGGACTACGCAGTTCGGCGACTGGCGAAGTTTTTAGCACATCCAATTCAATTCAACAGCCAGGTGGCTCGCATTATCCATCAACGCCTCCAAATGGTTTTTCTTCAAAAGGAGGAAACCCCTTTGGATAA 2052 0.4337 MANRNKEDEKIEKAIRSLVKLTENKRCINCKSLGPQYVCTTFWTFVCTNCSGVHREFTHRVKSVSMAKFTSDEVSALQAGGNEKARQVFFKDWDCVRNSYPESSNIPKLRNFIKHIYVDRRYTGERKGNQFPTTVLTDKEESRQSRNISSLSFDARNSHERRYSLRFSERSSPVGNSYERSFRYNDETVSPRIFPRGGRSIRSSPKFEIVDDRFRDEECGGRRRSNVERSSSLNLQRYGQGSQSPIAHHYVEISVENNISKPPSSPAVRHVADIFGENSLPLMVGDNAQSKEKGVEVSLTDQSNVDVTQAPESIIDLSDNFQTPGSAAASQTQPLSQSNNDSNWASFESTDTGKAGEIKKSINSVEGLLFELSGPTSDSPFVHKPEVLCQKATSAENADIFSAAGTSPSVALWQMDSPPQGVPAALTVASRTTNVPAQSSDGMRVQPELRSHVDYNKISNERWASSSFPNTQGSSGTPSEKCSQAPSAPAQDLSSGVESHSSSPETKSHGKKELSAELFSMSYSSIRGQMGGWQNSQPQCLGFSMEHYPTALAPTYPIAANSTNPFDITDGRTQGQFPGMASLQAALPGSTAPNVGIWPASSFGNANYPPPISHQPQFAPALPNSTYMEQVKNHTPPNRPQGLRSSATGEVFSTSNSIQQPGGSHYPSTPPNGFSSKGGNPFG* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01396 683 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Pte16g01396 683 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Pte16g01396 683 MobiDBLite consensus disorder prediction 128 153 - -
Pte16g01396 683 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Pte16g01396 683 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Pte16g01396 683 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Pte16g01396 683 PANTHER ARFGAP/RECO-RELATED 1 683 IPR044820 GO:0005096
Pte16g01396 683 MobiDBLite consensus disorder prediction 629 683 - -
Pte16g01396 683 MobiDBLite consensus disorder prediction 629 676 - -
Pte16g01396 683 SUPERFAMILY ArfGap/RecO-like zinc finger 12 123 IPR037278 -
Pte16g01396 683 Coils Coil 4 24 - -
Pte16g01396 683 Gene3D Arf GTPase activating protein 1 134 IPR038508 -
Pte16g01396 683 MobiDBLite consensus disorder prediction 226 241 - -
Pte16g01396 683 MobiDBLite consensus disorder prediction 317 353 - -
Pte16g01396 683 MobiDBLite consensus disorder prediction 460 503 - -
Pte16g01396 683 CDD ArfGap_AGFG 12 122 - -
Pte16g01396 683 MobiDBLite consensus disorder prediction 317 350 - -
Pte16g01396 683 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Pte16g01396 683 MobiDBLite consensus disorder prediction 460 512 - -
Pte16g01396 683 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Pte16g01396 683 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01396 Pte-Chr16 33431285 33436888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01396 15 128 C2H2 Transcription Factor Family AT3G07940 28.814 9.25e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01396 - - qsa:O6P43_015620 503.442