Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01393 ATGGATGCTTGCACTACTGAATTAGATTCTGAAAGTTTGGCTGACTCTTATTCTTTGCTAATGGAACACCGGGATATCCATTACAACAGTGACCACATTATTGACATAACAGGAAGTGGTGAGGTGTCCAGTTCTCCACATGATAGAAATCACGATGCCACAGATAGATCACAGCATGAAAACGGGCCTTCAATTAGCGAAAGGTTACCTGCTTATTATGCTCAATTTTCTTCAAACATATCTAACGGAACGAATTCAAGAAATTCATCACGAGGGGATGCCCGCAGGCGCACAAGTCCATTGAATTCTGGCCTATGGATTTCCACTGAACTGATTGTTACAGTAAGCCAAATCATTGCATCTATAATAGTTCTGTCTCTGTCAAGAAATGAGCATCCGCACACGCCCTTGTTTGCATGGATTGTTGGTTATGCGTCTGGATGTGTTGCTACCCTCCCTCTTCTTTATTGGCGATATCATCAACACAACCTTGCACCAGAACGATCTACACCTCAACCCCGTCAAGCTTCCCAGATAAATGTTCCTGCTGGGCCTTTTTCTCTGTCAGTTACTAGAACTGAAGGAGAAGATCATCAGACTGTGGCTGCCACATCACCCAGAAACAGGCAAGGCTTAGTGGCTCTGAATGCAAGGTTCAATGTACTAATCGAATACTTCAAAATGGGTTTAGATTGCTTCTTTGCCGTGTGGTTTGTTGTGGGCAATGTGTGGATTTTTGGGGGGCACACTTCTGCTGACGAGGCTCCTAATCTGTACAGGTTGTGTATAGTGTTTCTTACCTTTAGCTGTATTGGATATGCTATGCCCTTCATTCTATGTGCAACAATCTGTTTTTGTCTGCCTTGTATAATTCAAATTCTTGGGCTGAGGGAGGATCCACAGACGAGAGGAGCCACCACTGAATCTATAAATTCTCTGCCAACATACAAGTTCAAGTTGAAAACCAAAAATAATGATGAAAGCAACTCCAGTGTTGAAGGAGGTATTGTTGCTGCTGGGACTGAAATGGAACGGGTGATCTCTGGGGAAGATGCAGTTTGCTGCATCTGCTTGGCAAAATATGATAATAATGATGAATTGAGAGAGTTGCCTTGCTGTCATTTTTTCCACAAAGAATGTGTCGACAAGTGGTTGAAGATAAATGCACTGTGTCCTCTTTGCAAAAGTGAAGTTGGTGAAAGCAATACAGAATCTTCTTCAGGGGGAAATGCCACGGGACAATAA 1245 0.4289 MDACTTELDSESLADSYSLLMEHRDIHYNSDHIIDITGSGEVSSSPHDRNHDATDRSQHENGPSISERLPAYYAQFSSNISNGTNSRNSSRGDARRRTSPLNSGLWISTELIVTVSQIIASIIVLSLSRNEHPHTPLFAWIVGYASGCVATLPLLYWRYHQHNLAPERSTPQPRQASQINVPAGPFSLSVTRTEGEDHQTVAATSPRNRQGLVALNARFNVLIEYFKMGLDCFFAVWFVVGNVWIFGGHTSADEAPNLYRLCIVFLTFSCIGYAMPFILCATICFCLPCIIQILGLREDPQTRGATTESINSLPTYKFKLKTKNNDESNSSVEGGIVAAGTEMERVISGEDAVCCICLAKYDNNDELRELPCCHFFHKECVDKWLKINALCPLCKSEVGESNTESSSGGNATGQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01393 414 Pfam Ring finger domain 354 395 IPR001841 -
Pte16g01393 414 FunFam E3 ubiquitin-protein ligase 337 404 - -
Pte16g01393 414 ProSiteProfiles Zinc finger RING-type profile. 354 395 IPR001841 -
Pte16g01393 414 SMART ring_2 354 394 IPR001841 -
Pte16g01393 414 SUPERFAMILY RING/U-box 344 400 - -
Pte16g01393 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 412 IPR013083 -
Pte16g01393 414 MobiDBLite consensus disorder prediction 78 99 - -
Pte16g01393 414 MobiDBLite consensus disorder prediction 37 64 - -
Pte16g01393 414 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 398 - -
Pte16g01393 414 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01393 Pte-Chr16 33344811 33348606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01393 12 406 C3H Transcription Factor Family AT1G80400 50.483 1.21e-148 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01393 - - qsa:O6P43_015633 557.755