Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01366 ATGGATCAGTATTCTGGTAAAAGAGCTATTGATGGAGTGATACTCCCCAGAAAGGGCCCTGGTCAGGTTTTTGGAGATGCCGTCAACAAAAGGGATCAAAATCCTCAACTTTGCAATGGACTTGGTTGCAACGAAAGAGTCAACTCCCAGAAAGATGTCCAAACTGGTTATTTTGAAAAGGGTAAATCCCTGATGCCATCGGTTCGTTCCTCTTCAAGTGGTAAAGAAGCAATTGGAACTTGTTCTAAAGCTTATTGTAGTTCAAGTAACCCAAGAAAATCCTTGACTGCAGAAAGGAAAACACTTTACTCGCATTTAGAAACAGATTCATCTGAAACTAGTAGTTTGCAAGATGAACCAGAAGGTTTGGAGCTCATTCCTACACCTGAGAAAATTCAGAGAGGCCTTCGAGCTGAATCTAAAAATGTAGAGTCAAGAAATGCTATCATAATTGGTTCTAGTGTTGCATCAAATGTCAGTTCACCTAGGAACTTAAATGAAAGAAATGGATTGCAAAGTCTAGATGCAGTAGCAGGTAATTCTCTTTCTCTGGGCTCTAGAAGAACCGACCATTCGACAAATGTTGGTAGTAATAAATCTGGTTTGAAGAACTTAAGATGCAATTCAGATGCTATCCCCCCAGGTTATTCATCTTCAGAGTCAAACCTCAATAGAAGGAAAGATATCATAAAGAAAAGAAATGCTGGGGGAGAAAGTAGCTCTAAGTCTCGAGGGAAGAAGATAATTGATTCAGCATCAGAAGCGTGGAAGGCTAGTTCCCGAAATGGAATTTCTATCAATGAGATAAGGCGATCTGGAAATACTCCTCCCAACAGGGATAATGCAGTGACCTCAGCTAGGAGTAGGCGAACAAATAAAGGTCATACTAGAGCTAGGCTCTCGAATCAAGGAAATGAAAGCTCCATCTCTTCTAATGATACCACTCTTGTAACATCACCCGTGTCTGATCCTGATGACCTTAGTTCTTCTGCTTTATCACTTCATTTACCTTCAGAGACTTCCACAGGTCATCCAAATTCTTTCAGTAGACCTGGAAATAGCAGTGAGCGCATATTTACTATTATGCCTACCTGTTCTGGTGAAGTTTTCAGTACTCATTCTTTGGTGAATCCAGATAACGTTAGAAGATTTAATATAGATGGAATTGCAGAGGCGTTGCTGGCTTTTGAGAGGTTTGATCAAGAAGAAGCACGGGCGTACGATCAAATGCGAATTCTGGGGACAAACATGTTCCGTAATAGTCTAACATTGTACGATCGGCATCAGGACCTAAGGCTGGATATTGATAATATGACATATGAGGAATTGTTAGCTCTTGAAGAGAGGATGGGCACTGTTAGCACAGCACTTACCGAGGAAATATTAGCAGAATCTCTGAAGGAAAGCATTTATCAATCTTCACCATCAGATGATGTAACTGAGGGTTGTGATCATGGGGATAATGATGATATCAAATGCAGCATCTGCCAGGAAGAATATATGGTGGGAGATGAAGTTGGCAATTTACAATGTGAGCATATGTATCATATAGACTGCATCCAGCATTGGCTGCGGTTGAAAAATTGGTGTCCAATATGTAAAGCACCAGCTGCACTCTCAAGATCTGTTCCAGTCATCAGGTGA 1644 0.4088 MDQYSGKRAIDGVILPRKGPGQVFGDAVNKRDQNPQLCNGLGCNERVNSQKDVQTGYFEKGKSLMPSVRSSSSGKEAIGTCSKAYCSSSNPRKSLTAERKTLYSHLETDSSETSSLQDEPEGLELIPTPEKIQRGLRAESKNVESRNAIIIGSSVASNVSSPRNLNERNGLQSLDAVAGNSLSLGSRRTDHSTNVGSNKSGLKNLRCNSDAIPPGYSSSESNLNRRKDIIKKRNAGGESSSKSRGKKIIDSASEAWKASSRNGISINEIRRSGNTPPNRDNAVTSARSRRTNKGHTRARLSNQGNESSISSNDTTLVTSPVSDPDDLSSSALSLHLPSETSTGHPNSFSRPGNSSERIFTIMPTCSGEVFSTHSLVNPDNVRRFNIDGIAEALLAFERFDQEEARAYDQMRILGTNMFRNSLTLYDRHQDLRLDIDNMTYEELLALEERMGTVSTALTEEILAESLKESIYQSSPSDDVTEGCDHGDNDDIKCSICQEEYMVGDEVGNLQCEHMYHIDCIQHWLRLKNWCPICKAPAALSRSVPVIR* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01366 547 SMART ring_2 493 533 IPR001841 -
Pte16g01366 547 FunFam E3 ubiquitin-protein ligase arkadia 454 539 - -
Pte16g01366 547 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 69 537 IPR045191 GO:0061630
Pte16g01366 547 MobiDBLite consensus disorder prediction 183 223 - -
Pte16g01366 547 MobiDBLite consensus disorder prediction 266 355 - -
Pte16g01366 547 ProSiteProfiles Zinc finger RING-type profile. 493 534 IPR001841 -
Pte16g01366 547 MobiDBLite consensus disorder prediction 297 355 - -
Pte16g01366 547 Pfam Ring finger domain 492 534 IPR001841 -
Pte16g01366 547 MobiDBLite consensus disorder prediction 266 289 - -
Pte16g01366 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 454 538 IPR013083 -
Pte16g01366 547 MobiDBLite consensus disorder prediction 183 225 - -
Pte16g01366 547 SUPERFAMILY RING/U-box 487 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01366 Pte-Chr16 33095902 33099935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01366 374 537 C3H Transcription Factor Family AT2G15530 41.818 3.91e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01366 - - cave:132190258 547.354