Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01362 ATGTCTCGCGTCTATGTTGGAAACTTGGATTCGCGTGTTACTGAACGCGATCTTGAAGATGAATTCCGTACCTTTGGAGTTCTACGCAGCGTTTGGGTTGCAAGAAGACCACCTGGTTACGCGTTTATTGACTTTGATGATCGAAGAGATGCACAAGATGCTATTCGTGAATTAGATGGTAAGAATGGTTGGAGAGTGGAACTTTCTCACAATTCCAGAGGAGAAGGAGGGGGTCGCGGCGGAGGGGGTCGTGGACGATCCGGTTCTGACGTGAAATGTTACGAGTGTGGTGAACCTGGCCATTTTGCTCGTGAATGCAGAGTGCGTGGGGTCTCTGGTAGGCGTCGTAGCCGTAGTCCTCCAAGATCTCGCAGGAGCCCAAGTTATGGTCGACGGAGTTACAGCCCCCGTGGTAGGTCTCCAAGGCGTCGTAGCCCATCCACTCGAGGACGTAGTTACAGCAGGTCCCCTGGCAACGGTGGACGTGAGGACATCGTTCCATATTCTAATGGGTGTTGGGAGCATCATGATATTTGCTGTCAATGGAACTGTCTGCAACATGCTGGAAATCGGAATGCAAGGATGAAACTTCTCCCTCTCCGTTACCTAGACTGCAGAACTCTGGGTCATGATGATCGCAAGAAATGGCTAAAGAGTACTAGCATTTTTGGTAACTGTAATCCAGATAACAACATCTCAAATTTGGAATATTTGCTGACACTGAAAAATGACGTTGTCTCTTCAAACTTCGTAGAGAAGGATCTTTATTGTTTATGGTGGGGCTTGCAGAATTTAAGTTGTTGTGGCCAGAATCTGAGTACTAGCACATTTATTGGGGAAACTGCATTTGCCATACTCATAGCTATTTTTGGTCTGGTGTTGTTTGCCCATTTGATAGGTAACAACGTGACACTGAAGAGTGGATGA 927 0.4714 MSRVYVGNLDSRVTERDLEDEFRTFGVLRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGEGGGRGGGGRGRSGSDVKCYECGEPGHFARECRVRGVSGRRRSRSPPRSRRSPSYGRRSYSPRGRSPRRRSPSTRGRSYSRSPGNGGREDIVPYSNGCWEHHDICCQWNCLQHAGNRNARMKLLPLRYLDCRTLGHDDRKKWLKSTSIFGNCNPDNNISNLEYLLTLKNDVVSSNFVEKDLYCLWWGLQNLSCCGQNLSTSTFIGETAFAILIAIFGLVLFAHLIGNNVTLKSG* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01362 308 ProSiteProfiles Zinc finger CCHC-type profile. 92 107 IPR001878 GO:0003676|GO:0008270
Pte16g01362 308 CDD RRM_SRSF3_like 3 71 - -
Pte16g01362 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Pte16g01362 308 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Pte16g01362 308 SUPERFAMILY Voltage-gated potassium channels 250 302 - -
Pte16g01362 308 FunFam Serine/arginine-rich splicing factor RSZ22A 89 149 - -
Pte16g01362 308 SMART rrm1_1 3 69 IPR000504 GO:0003723
Pte16g01362 308 SMART c2hcfinal6 92 108 IPR001878 GO:0003676|GO:0008270
Pte16g01362 308 MobiDBLite consensus disorder prediction 66 89 - -
Pte16g01362 308 Gene3D - 81 147 - -
Pte16g01362 308 Pfam Zinc knuckle 92 107 IPR001878 GO:0003676|GO:0008270
Pte16g01362 308 Gene3D - 2 69 IPR012677 -
Pte16g01362 308 SUPERFAMILY Retrovirus zinc finger-like domains 83 107 IPR036875 GO:0003676|GO:0008270
Pte16g01362 308 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 150 - -
Pte16g01362 308 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Pte16g01362 308 MobiDBLite consensus disorder prediction 107 162 - -
Pte16g01362 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01362 Pte-Chr16 33066728 33071356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01362 202 304 Ion Channels AT2G24610 60.000 1.63e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01362 K12896 - sind:105161477 210.69