Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01328 ATGTCTCCACCACTTCTTGGTGTGGGGGACGAAGAGGGTAAACAAAATGTCAGCTTATTGACTTCCTCAGCGTCCACTGAAAATGGGTGCCTAAAAGGCACTGCATTGAAAGAAAGGAACTATATGGGGTTATCTGATTGTTCTTCTTCTGAGGACAGCTCAGTTGTGTCCATTGTGTCAGCTGAAAGCAAAAAGAATCTGAATTTCAAAGCTACAGAACTGAGACTTGGGCTTCCTGGTTCTCTGTCTCCTGAAAGAGGAACAGATCTCTCCCTAAGAAGCTCAACTCAACTTGGTGAAAAGCCATTATTTCCTCTACGTCCTTCAAATGATGATCACTATTTACCATCACCAAAAACTGCTGTTTTGGGTAGCAAAAGGGGGTTTTCAGATGCTATGAACGGGTTCCCTGAGGGAGATTTTCTTGTTCACCCTGAGGTGAACGTAATTTTGTCAGCTCGGCCTGCATCAAACTTTGCTGAACGAAAATCTTGTTCTGTGCTTGAGAATATTAAGGCTCAACCAACCAAAGCTACAGAAGGATCACCGACGAAGGCATTGCATGAGAGGGTTCGTATCAGCAATGAAACTAGAGGAAACCAAAATGGTCCTGCAAATAATACTAGCAATGCTCCTGCTAGCAAGGCACAGGTCGTTGGCTGGCCACCTATAGGATCATTTAGGAAGAATTCATTGGCTACAAAGACTGCAGATGAGGTAGATGGGAAAGCAGGGGCAAATGCACTGTTTGTAAAGGTCAGTATGGATGGTGCTCCATATCTTCGGAAAGTAGATTTAACAAGCTACTCTGGGTATCCGGAGCTTTCTTCTGCTCTTGAGAAGATGTTCAGTTGTTTTACCATAGCGCTTGGCAGAGAGACTCTTTGTGAAAGCAAGCTGAAGGATCTGCTTCATGGCTCAGAATATGTTCTTACTTATGAGGATAAAGATGGTGACTGGATGCTTGTTGGTGATGTTCCCTGGGAGATGTTTATTGATACCTGCAGGAGGATGAGAATCATGAAAAGCTCTGATGCTATTGGCTTAGCTCCGAGGGCAGTGGAAAAGAGCAAGAGCCGGACCTAA 1086 0.4438 MSPPLLGVGDEEGKQNVSLLTSSASTENGCLKGTALKERNYMGLSDCSSSEDSSVVSIVSAESKKNLNFKATELRLGLPGSLSPERGTDLSLRSSTQLGEKPLFPLRPSNDDHYLPSPKTAVLGSKRGFSDAMNGFPEGDFLVHPEVNVILSARPASNFAERKSCSVLENIKAQPTKATEGSPTKALHERVRISNETRGNQNGPANNTSNAPASKAQVVGWPPIGSFRKNSLATKTADEVDGKAGANALFVKVSMDGAPYLRKVDLTSYSGYPELSSALEKMFSCFTIALGRETLCESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRMRIMKSSDAIGLAPRAVEKSKSRT* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01328 361 MobiDBLite consensus disorder prediction 196 215 - -
Pte16g01328 361 Gene3D - 243 355 - -
Pte16g01328 361 MobiDBLite consensus disorder prediction 195 215 - -
Pte16g01328 361 MobiDBLite consensus disorder prediction 78 99 - -
Pte16g01328 361 ProSiteProfiles PB1 domain profile. 248 343 IPR000270 GO:0005515
Pte16g01328 361 FunFam Auxin-responsive protein 243 353 - -
Pte16g01328 361 SUPERFAMILY CAD & PB1 domains 246 342 - -
Pte16g01328 361 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 348 IPR003311 GO:0005634|GO:0006355
Pte16g01328 361 Pfam AUX/IAA family 72 352 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01328 Pte-Chr16 32772289 32776709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01328 262 343 B3 DNA Binding Superfamily AT1G19220 37.805 1.90e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pte16g01328 AUX_IAA 2.2e-80 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01328 K14484 - qsa:O6P43_015419 495.352