Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01327 ATGGAGCTTAATGAGAATGATTTCTTAGAAGAACTACTAGCTCTAAGGAAAGAAACATGGGAAACTCCATTGGAGAGTACCAATGATCAGATGTTCTTCAGTACTGGCTTGAGTTTTGATACCTCTGATCATTACATCAATAACCCTCTAGCTAATTTCCAAAGTGTTCATGAGGAACACTATCACAAAAGCAACATCAGCAGCATGTTTTTAAATGATGTCTATGGTTATGGCCCTTTTCTTGATGAATTACCAGTACCCCAAATTGGAGATTCACCGTACAACGCTACAATGGATACTTCAATTGATGACACTGCTCCTTTCTTGGCTCAAGACGAATACCCGCCGTCTCTTTTTGAAGAGGATGATCCAACAAGTTTTCTTGGGGTGGAACTGCGCAGTGAGGAATCACCAATTAACTGTAAAATGGAGCCAATGCAGGAATCTCCTGAAATGCCAGGTTTCAATTTTGGTGCTTGTGCTGAAAGAAAAAATCGATCTAAGAAGTTGCAAGGTCAGCCTTCAAAGAATTTAATGGCTGAGAGACGAAGAAGAAAGAGACTCAATGACCGCCTTTCCATGCTTAGAGCAATCGTCCCAAAGATAAGCAAGATGGATAGAACATCCACGCTTGGAGACACAATAGACTACTTGAAAGAACTACAGGAAAAGATTAACAATCTGCAGCAAGAACTTGAAGGGAAGTCGAACATGGAGGGCATCTTCAAAGATGAAAATGTAAAACCAGATGAAATAGTAGTGAGAAACTCACCAAAGTTTGATGTGGAGAGGAGGGACGTCGACACAACTATTGAAATCTGCTGTGCAGGCAAGCCAGGGTTGTTGCTGAAAATGGTGGATACTCTTGAAGCATTAGGCCTTGAAATCCAGCAGTGTGTTATCAGTTGCTTCAATGATTTTGCAATGCAGGCTTCCTGCTTTGAGGAATCTGAGCAGAGGACAGCAACAACCATTGAAGACATAAAGCAAGCATTGTTCAGAAATGCAGGTTATCATTTGTAG 1023 0.4115 MELNENDFLEELLALRKETWETPLESTNDQMFFSTGLSFDTSDHYINNPLANFQSVHEEHYHKSNISSMFLNDVYGYGPFLDELPVPQIGDSPYNATMDTSIDDTAPFLAQDEYPPSLFEEDDPTSFLGVELRSEESPINCKMEPMQESPEMPGFNFGACAERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSTLGDTIDYLKELQEKINNLQQELEGKSNMEGIFKDENVKPDEIVVRNSPKFDVERRDVDTTIEICCAGKPGLLLKMVDTLEALGLEIQQCVISCFNDFAMQASCFEESEQRTATTIEDIKQALFRNAGYHL* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01327 340 MobiDBLite consensus disorder prediction 164 184 - -
Pte16g01327 340 SMART finulus 178 227 IPR011598 GO:0046983
Pte16g01327 340 Coils Coil 211 238 - -
Pte16g01327 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 234 IPR036638 GO:0046983
Pte16g01327 340 CDD ACT_UUR-ACR-like 269 332 - -
Pte16g01327 340 Gene3D - 162 237 IPR036638 GO:0046983
Pte16g01327 340 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 68 337 - -
Pte16g01327 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Pte16g01327 340 Pfam Helix-loop-helix DNA-binding domain 178 222 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01327 Pte-Chr16 32761824 32763306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01327 163 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 63.687 9.77e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte16g01327 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01327 - - qsa:O6P43_015421 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g01327 16 32761824 32763306 Pte16g01327 16 32761824 32763306 RCT