Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01318 ATGGGGATTCTAACTTCAAATTATTCACCAAGAAGATTGGTTCTATGGATATTGATGCACTTCTCTGGCTTGGTTGTTAATGGCATGTCTTCCCCTGAAGTAAAATTGCATATCCTAGATAAATATGTGGTGATGGATAATGGAATGGTTCAGGTTACAATATCAACCCCAGAAGGATTTGTCACGGGTATCCAATACAATGACATTGACAATTTGCTTGAAGCCCTTCACCATGAAAATGACAGAGGGTACTATGATATAGTGTGGAACCTGGCAGGAAGTCCAGGAACAAAGGGTAAATTTGATAGGTTGGAAGCAACAGAGTTTAAGGTGATAGTGGAAAATGAAGAACAGTTGGAGCTTTCTTTCACCAGAATGTGGAATTCCTCATTTGATGGCAAGCTTGTTCCCTTGAATATAGACAAGAGGTTTGTCATGCTGAATGGTTCTTCGGGCTTTTATACCTATGCTATTTATGAGCACTTGAAGGAATGGCCTGCATTCAACCTTGACAACACCAGGGCTGTGTTCAAGCTGAGAAAAGACAAGTTTCATTACATGGCTATAGCAGACAACAGACAAAGGTATATGCCTTTGCCTGATGACCGCATACCAGATAGAGGCAAACCACTGGCCTATCCTGAAGCTGTACTACTAGTTGATCCTGTAGAGCAAGAATTCAAAGGAGAGGTGGATGACAAGTACCAATATTCTTGTGAGAGTCAGCATAATCAAGTTCATGGTTGGATATGCACTGACCCACCTACTGGGTTCTGGCAAATTACACCCAGCTCCGAGTTCCGTTCCGCTGGGCCTGTTAAACAGTATATCACATCCCACGTGGGCCCAAATACTCTCGCTGTATTTCACAGCACTCATTATTCCGGACTCGATCTGGTAATGAAATTCGGAGCGAACGAGACATGGAAGAAAGTGTACGGCCCAATATTTATATACCTAAACTCTCAGTCCAATAATGGGAGCGACCCAATTAATGAGCTTTGGGAGGACGCGAAAGAACAGAGAACGGTTCAAGTGGAGAGTTGGCCCTATCGTTTTCTTGCTTCTGAGGACTTTCCTCCATCTGAACAAAGGGGTCATGTCACAGGAAGAATGCTCATTTTTGACAGGTATATAACTGAGGAGTACATCCCAGGTAACCATTCCTACGTGGGTTTAGCACCAACAGGAGATGTGGGGTCTTGGCAAACAGAAAGTAAGGGTTATCAGTTCTGGACTGTGGCAGATGATCTAGGTTATTTTTCCATTAACAACATACGTCCCGGACATTACAACCTTTATGCATGGGTCCCTGGGTTTATAGGCGAGTACAGATATCAACATGTCATGAACATAACCTCAGGTTCCAGAATTGAGATGAGTGATATTGTTTATATGCCCCCCAGAAATGGCACTACAATTTGGGAGATAGGCGTTCCTGATCGTTCTGCTGCTGAGTTCTATGTTCCTGATCCAAATCCAAAATACATCAACATACTTTATGTCAACCATACTGACAGGTTTAGACAATATGGATTGTGGGAAAGATATGCAGATGAGTATCCAGATGAAGATTTAGTTTATACTATAAACACCAGCAATTACAAGACAGATTGGTTTTTTGCTCAAGTCACCAGGAAGACATCTAATCACACATATCAAGGAACAACATGGCAAATTCACTTCAAGCTTGACAATGTGGAAACAAATGGAACCTACACACTGCAATTAGCACTCGCATCTATACATGATTCTGATTTACAAGTTAGGATCAATGGCCTAGAATCAAACCCACCTGCATTTTCAACCGGAAAGATTGGGACAGATAATACAATCGCCAGACATGGAATTCATGGACTGTACCGGTTGTTCCATGTTGAATTACAGGGAGATTTTCTGGTTGTGGGAAATAACACTATTTTTTTAACACAGAATGCAACTGGGAGTCCATTCCAGGGGATTATGTATGATTATATTCATCCTAGCATTACCTTTATCAATATGCAGGTGGAAATGGATAATGGCATAGTCCAAGTGACAATCTCAAAGCCCGGAGGTTTTGTCACAGGGATAAGGTTTAATGGCATGGACAACCTGCTTGAAGTTCGCAATGATGATGATAACAAAGGGTACTGGGACATTGTTTGGAGTGAGGCAGGCACCACAGGAACAACAGGAACATTTGATAGAATCAAAGGGACTAGTTTCAAGGTTATAGTTGAAACCGAGGATCAAGTGGAAGTGTCATTCACAAGAATCTGGGATCCATCTCTAACAGGAAAGCTAGTGCCTCTCAACATAGATATAAGGTTTGTCATGCTTAGGAATTCCTCTGGCTTTTACTCTTACGCCATCTATGAGCACTTGCAGGAGTGGCCGCCTTTCAACTTGCCCCAGACGAGGATTGTGTTTAAGCTCCGAAAGGACAAATTTCATCATATGGCAGTAGCAGACAACAGGCAAAGGTATATGCCACTCCCAGAAGACAGGTTACCACGAAGAGGAAGGGAACTGGCTACCCCAGAAGCAGTCTTGCTTGTTCATCCCGTAGAGCCGGAGTTCAAAGGGGAGGTGGACGACAAGTACCAATACTCAAGCGAGAACAAGGATCTTAAAGTCCATGGATGGACTTGCTCTGCAACTAACACTCATCCAGCTTTAGGGTTCTGGGTGATTTTTCCAAGCAATGAGTTCCGATCAGGTGGACTCCTCAAACAGAACCTTAGTTCTCATGTTGGTCCAACCTCCCTTGCTATGTTTCTTAGTGCGCACTATGCAGGAGAGGATCTAGTGCTGAAACTTCAATCCAATGAGCAGTGGAAAAAGGTTTTCGGGCCAGTGTTCATGTATCTTAATTCTTCTGCTGACACTGATGATCCCCTCTTGCTTTGGGAAGATGCCAAATCCCAGCTCATCAAGGAAGTACAGAGTTGGCCCTATGGTTTTCCTGCTTCAGAGGATTTTCAACGCTCTGATCAACGTGGTACCATTGATGGTAGACTCTTGGTCCTTGACAGGTTTTTGAGTGATTGTTGCTTGTCTGCTCGTGATGCCTATGTGGGGTTGGCACCACCTGGAGATGTTGGATCCTGGCAAACAGAATGCAAGGGTTATCAATTTTGGACAAAGGCAGATGAGGAAGGCCACTTCTCAATATCGAACATACGAAATGGAGACTACAACCTTTATGCATGGATTCCTGGATTCATTGGAGAATATCGTTATAATGATGTTATCACCATCACCCCTGGTGGGGTACTTAATATTGGGGACATTGTTTACGAACCACCAAGAGATGGACCGACAATATGGGAAATTGGCATTCCTGATCGTTCTGCTGCTGAGTTTTATGTTCCTGATCCTAACCCCATGTACATTAACAAGCTCTATGTCAACCATCCAGACAAGTTTAGGCAGTACGGTCTATGGGAAAGATATGCAGAGCTATACCCCGATGCAGACTTGGTCTATACAGTAGGTTCAAATGACTTCAGCAAAGACTGGTTCTTTGCTCAATGTACCAGGAAGAAAGATGGTAACACATACCAAGGAACCACATGGCAAGTTAAGTTCAAACTAGACAAAGTGCAGACCACAGCAACCTATAAACTACGATTGGCACTGGCAACAGCAAATGTTTGTGAACTCCAGGTGAGAGTGAACAATCCAGGACAAACTCCTCCTCTATTCACAACTGGGGTAATTGGAAAAGACAACACTATTGCTAGACATGGAATTCATGGACTCTACCGCCTCTACAATTTGGATATCCCAGGGACTCAGCTTGTCGAAGGAGATAACACCATTTTTCTGACACAACCCATAGCTGCAGGCCCTTTCAATGGTTTAATGTATGACTACCTTCGGCTAGAAGGCCCATCAGCTTCATCCCCCGACATTCCATGA 3906 0.4339 MGILTSNYSPRRLVLWILMHFSGLVVNGMSSPEVKLHILDKYVVMDNGMVQVTISTPEGFVTGIQYNDIDNLLEALHHENDRGYYDIVWNLAGSPGTKGKFDRLEATEFKVIVENEEQLELSFTRMWNSSFDGKLVPLNIDKRFVMLNGSSGFYTYAIYEHLKEWPAFNLDNTRAVFKLRKDKFHYMAIADNRQRYMPLPDDRIPDRGKPLAYPEAVLLVDPVEQEFKGEVDDKYQYSCESQHNQVHGWICTDPPTGFWQITPSSEFRSAGPVKQYITSHVGPNTLAVFHSTHYSGLDLVMKFGANETWKKVYGPIFIYLNSQSNNGSDPINELWEDAKEQRTVQVESWPYRFLASEDFPPSEQRGHVTGRMLIFDRYITEEYIPGNHSYVGLAPTGDVGSWQTESKGYQFWTVADDLGYFSINNIRPGHYNLYAWVPGFIGEYRYQHVMNITSGSRIEMSDIVYMPPRNGTTIWEIGVPDRSAAEFYVPDPNPKYINILYVNHTDRFRQYGLWERYADEYPDEDLVYTINTSNYKTDWFFAQVTRKTSNHTYQGTTWQIHFKLDNVETNGTYTLQLALASIHDSDLQVRINGLESNPPAFSTGKIGTDNTIARHGIHGLYRLFHVELQGDFLVVGNNTIFLTQNATGSPFQGIMYDYIHPSITFINMQVEMDNGIVQVTISKPGGFVTGIRFNGMDNLLEVRNDDDNKGYWDIVWSEAGTTGTTGTFDRIKGTSFKVIVETEDQVEVSFTRIWDPSLTGKLVPLNIDIRFVMLRNSSGFYSYAIYEHLQEWPPFNLPQTRIVFKLRKDKFHHMAVADNRQRYMPLPEDRLPRRGRELATPEAVLLVHPVEPEFKGEVDDKYQYSSENKDLKVHGWTCSATNTHPALGFWVIFPSNEFRSGGLLKQNLSSHVGPTSLAMFLSAHYAGEDLVLKLQSNEQWKKVFGPVFMYLNSSADTDDPLLLWEDAKSQLIKEVQSWPYGFPASEDFQRSDQRGTIDGRLLVLDRFLSDCCLSARDAYVGLAPPGDVGSWQTECKGYQFWTKADEEGHFSISNIRNGDYNLYAWIPGFIGEYRYNDVITITPGGVLNIGDIVYEPPRDGPTIWEIGIPDRSAAEFYVPDPNPMYINKLYVNHPDKFRQYGLWERYAELYPDADLVYTVGSNDFSKDWFFAQCTRKKDGNTYQGTTWQVKFKLDKVQTTATYKLRLALATANVCELQVRVNNPGQTPPLFTTGVIGKDNTIARHGIHGLYRLYNLDIPGTQLVEGDNTIFLTQPIAAGPFNGLMYDYLRLEGPSASSPDIP* 1302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01318 1301 Gene3D - 361 459 - -
Pte16g01318 1301 Gene3D - 991 1090 - -
Pte16g01318 1301 FunFam Rhamnogalacturonate lyase B 990 1089 - -
Pte16g01318 1301 SUPERFAMILY Galactose-binding domain-like 470 659 IPR008979 -
Pte16g01318 1301 CDD RGL4_C 475 659 - -
Pte16g01318 1301 Gene3D - 664 962 IPR014718 GO:0030246
Pte16g01318 1301 Gene3D - 38 299 IPR014718 GO:0030246
Pte16g01318 1301 CDD RGL4_N 667 954 - -
Pte16g01318 1301 SUPERFAMILY Starch-binding domain-like 361 458 IPR013784 GO:0030246
Pte16g01318 1301 CDD RGL4_M 993 1092 IPR029413 -
Pte16g01318 1301 SUPERFAMILY Galactose-binding domain-like 1099 1291 IPR008979 -
Pte16g01318 1301 Gene3D - 470 663 - -
Pte16g01318 1301 Gene3D - 1100 1290 - -
Pte16g01318 1301 CDD RGL4_M 364 463 IPR029413 -
Pte16g01318 1301 SUPERFAMILY Starch-binding domain-like 1031 1092 IPR013784 GO:0030246
Pte16g01318 1301 Pfam Polysaccharide lyase family 4, domain III 473 659 IPR029411 -
Pte16g01318 1301 Pfam Polysaccharide lyase family 4, domain III 1102 1290 IPR029411 -
Pte16g01318 1301 FunFam Rhamnogalacturonate lyase B 361 460 - -
Pte16g01318 1301 Pfam Polysaccharide lyase family 4, domain II 1016 1085 IPR029413 -
Pte16g01318 1301 Pfam Polysaccharide lyase family 4, domain II 388 458 IPR029413 -
Pte16g01318 1301 CDD RGL4_N 42 324 - -
Pte16g01318 1301 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 670 1294 - -
Pte16g01318 1301 Pfam Rhamnogalacturonate lyase family 668 858 IPR010325 -
Pte16g01318 1301 Pfam Rhamnogalacturonate lyase family 31 231 IPR010325 -
Pte16g01318 1301 CDD RGL4_C 1104 1291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01318 Pte-Chr16 32703145 32712699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01318 29 660 Polysaccharide Lyase AT1G09890 63.349 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01318 K18195 - qsa:O6P43_015436 1050.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g01318 16 32703145 32712699 Pte16g01318 16 32703145 32712699 RCT