Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01303 ATGGCATGTCCTTGCTCTGCAAGATTTTCCTGTGATTTCAGGGTCTACAACAGTCATGGATGCAGAGTTCGCCACCATCATATGATCGGAAGAGGCCGATTGCATTTGGTTGGAATCAATGAGTCACTGAAGCAGGACTCAATAACTCTCCATCAATTATGTACAATGTGGGTTCCAATAAAACATGCACCTTCCAGATATGATGTTTTGGTGTGCCGATCAGTTCTGATACCTGGAGAAGGAAGTGGAATTTCTCTTCTGAAGTCCGCCACAGTTGCTTTGACAAAGTTATGTGATACTTTGCAACAAAGTCCCATTATGCTTCAGTTAATTCCAGCCGTTAGTATCATAACCTTTTCTGCGTGGGGCCTTGGGCCACTTCTGCGCTTGGGAAGGATTTTGTTTCTACAGAGAACTGATAGCAGTTGGAATGGAAGTAGATCACATTATGTTATGACCTCTTATCTCCAGCCTCTGCTACTTTGGACAGGAGCTATACTCATATGCAGGGCTTTAGATCCATTGGTCCTACCCTCGGAAGCCAGTCAGGCAGTCAAGCAACGGCTGCTGAACTTTGTCCGATCTTTGTCCACAGTCCTGGCATTTGCTTTTTGTCTATCAAGCTTGATTCAACAAGTCCAAAAATTCTTTAAGGAGACAAATGACTCAAGTGACCCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCCATGTATACTGCAGTATGGGTTGCTGCTGTCTCGTCATTCATGGAGTTGCTGGGGTTCTCTGCCCAGAAGTGGCTGACGGCTGGAGGTCTTGGCACAGTCTTGCTCACTCTTGCAGGCCGCGAGATATTTACAAATTTCCTTTCAAGTCTAATGATCCATGCAACCCGGCCATTTGCTGTAGACGAGTGGATTCAGACAAAGATTCAAGGATATGAAGTTTCTGGTACAGTTGAGCATGTAGGTTGGTGGTCACCTACGATTGTCAGAGGTGATGACCGTGAAGCTGTTCACATTCCAAATCACAAGTTCACTGTAAACGTTGTGCGAAACCTTAGTCAGAAATCTCATTGGCGTATCAAGACCCACATAGCCATCAATCACTTAGATGTGAATAAGATTAATATTATAGTAGCTGACATGCGCAAGGTATTAGCCAAAAATCCTCAAGTAGAGCAGAAAAAGTTGCATAGAAGGGTTTTTCTGGATAACATCAATCCAGATAATCAGGCGCTTCTGATATTGATATCTTGCTTCGTAAAGACCTCGCGTTTTGAAGAGTACCTCTATGTAAAGGAGGGAATTCTCTTGGATCTTCTGAGAGTTGTCAGCCATCATGGTGCTCGTCTAGCAACACCCATTCGCACAGTTCAGAAAATGTACAGTGAAACTGAATTGGAGAATGAATCATCTGATGATACCATATCCACTCGTTCCAGTGGAGCAACTCACCGTCCTCTCCTCTTGGCGGAATCTGCTTACAAAATCAATGGTGAAGATACAGTTAATACGTCAACTCATCCAAAAGAAAAAAATGAAGAAAAAGATCCCAATATTGATGAATCCTTGATACCTGATTCTAAGTCAGAAAGAAAGACTGGCCCAGTGCGAGTTCCTGATCTCCAAAACGATGATAGTGCTGCAGGAACAACAGCCTCCACTCCTAGCTCTGCTACAAAGTTGAAGTCAGGTTCTGGAACCCAAGCCCAGAAAATGGGTTTTGATGATTCAGTCTCTAAATCCTCCAAACTTGTGGAGCCAAAGAATGATGGGAGTGGAGATATAGGAGAGGAAACCTTTGGAGCAGGGTCTACAGAACTCCCACAAAACGTGTCAATCCCTGGTCAGGGGGAAACTCTTTCTGCCATTCAACAGGCAAAGCAAGATGGTGACAAGTCTGTTATGGCACCATCATCACCCAGGCCTTCTTTTGAGGACAATCTCGTTCTGGGTGTGGCTTTAGACGGTTCAAAGCGAACTCTTCCAATTGACGAGGAAGTCAATCCAACTCCTTTTTCCACAGAATCGAAGGGATTTGCAAACCAAGAAAGAGGTGTGAGCAGGCCTCCTCCTGCCAAGGATAAGAAAGATAGTCACGCGCCAAATCCTTCTGTGAAGAAGAATGATTAG 2118 0.4424 MACPCSARFSCDFRVYNSHGCRVRHHHMIGRGRLHLVGINESLKQDSITLHQLCTMWVPIKHAPSRYDVLVCRSVLIPGEGSGISLLKSATVALTKLCDTLQQSPIMLQLIPAVSIITFSAWGLGPLLRLGRILFLQRTDSSWNGSRSHYVMTSYLQPLLLWTGAILICRALDPLVLPSEASQAVKQRLLNFVRSLSTVLAFAFCLSSLIQQVQKFFKETNDSSDPRNMGFDFAGKAMYTAVWVAAVSSFMELLGFSAQKWLTAGGLGTVLLTLAGREIFTNFLSSLMIHATRPFAVDEWIQTKIQGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHIAINHLDVNKINIIVADMRKVLAKNPQVEQKKLHRRVFLDNINPDNQALLILISCFVKTSRFEEYLYVKEGILLDLLRVVSHHGARLATPIRTVQKMYSETELENESSDDTISTRSSGATHRPLLLAESAYKINGEDTVNTSTHPKEKNEEKDPNIDESLIPDSKSERKTGPVRVPDLQNDDSAAGTTASTPSSATKLKSGSGTQAQKMGFDDSVSKSSKLVEPKNDGSGDIGEETFGAGSTELPQNVSIPGQGETLSAIQQAKQDGDKSVMAPSSPRPSFEDNLVLGVALDGSKRTLPIDEEVNPTPFSTESKGFANQERGVSRPPPAKDKKDSHAPNPSVKKND* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01303 705 Gene3D - 189 293 - -
Pte16g01303 705 MobiDBLite consensus disorder prediction 599 628 - -
Pte16g01303 705 Gene3D - 295 350 IPR023408 -
Pte16g01303 705 SUPERFAMILY Sm-like ribonucleoproteins 279 349 IPR010920 -
Pte16g01303 705 MobiDBLite consensus disorder prediction 540 573 - -
Pte16g01303 705 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 693 IPR045042 -
Pte16g01303 705 MobiDBLite consensus disorder prediction 500 534 - -
Pte16g01303 705 MobiDBLite consensus disorder prediction 459 705 - -
Pte16g01303 705 MobiDBLite consensus disorder prediction 684 705 - -
Pte16g01303 705 MobiDBLite consensus disorder prediction 663 677 - -
Pte16g01303 705 Pfam Mechanosensitive ion channel 236 445 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01303 Pte-Chr16 32584877 32591414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01303 9 662 Mechanosensitive Ion Channel Family AT1G58200 54.410 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01303 K22047 - qsa:O6P43_019565 872.463